Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 0.0e+00 1114.0 536 100.0
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 0.0e+00 1103.2 536 98.9
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 8.7e-288 993.0 536 89.4
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 1.8e-269 932.2 540 83.3
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 2.9e-267 924.9 537 82.5
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 3.8e-259 897.9 542 79.3
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 5.0e-259 897.5 544 80.0
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 1.1e-258 896.3 522 82.6
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 4.2e-258 894.4 538 80.3
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 5.5e-258 894.0 536 79.9
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 1.2e-257 892.9 536 80.0
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 1.6e-257 892.5 537 79.9
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 1.6e-257 892.5 537 80.1
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 2.1e-257 892.1 543 79.7
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 2.7e-257 891.7 520 81.9
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 4.6e-257 891.0 531 80.8
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 1.4e-256 889.4 536 79.5
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 1.8e-256 889.0 539 79.4
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 3.0e-256 888.3 536 79.3
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 5.1e-256 887.5 537 79.3
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 6.7e-256 887.1 536 80.6
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 1.1e-255 886.3 543 78.5
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 2.0e-255 885.6 536 79.1
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 3.7e-254 881.3 539 78.7
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 8.2e-254 880.2 524 80.0
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 8.2e-254 880.2 536 80.2
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.4e-253 879.4 524 79.4
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 4.1e-253 877.9 537 78.6
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 6.9e-253 877.1 532 78.8
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 9.1e-253 876.7 542 77.9
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 1.5e-252 875.9 542 77.7
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 2.0e-252 875.5 527 78.6
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 2.0e-252 875.5 536 77.6
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 3.4e-252 874.8 523 79.2
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 3.4e-252 874.8 544 78.3
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 4.5e-252 874.4 536 78.4
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 5.9e-252 874.0 525 79.8
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 7.7e-252 873.6 524 78.8
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 1.7e-251 872.5 527 78.7
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 3.8e-251 871.3 536 77.2
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 6.5e-251 870.5 536 77.1
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 8.5e-251 870.2 537 77.5
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 1.1e-250 869.8 533 78.6
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 2.5e-250 868.6 536 78.0
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 4.2e-250 867.8 527 78.2
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 7.2e-250 867.1 540 76.9
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 2.1e-249 865.5 553 76.9
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 2.1e-249 865.5 536 77.6
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 7.9e-249 863.6 539 75.7
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 1.0e-248 863.2 543 76.4
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 1.4e-248 862.8 593 72.0
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 3.9e-248 861.3 523 78.2
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 5.1e-248 860.9 536 76.1
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 6.7e-248 860.5 539 76.6
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 6.7e-248 860.5 595 72.3
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 8.8e-248 860.1 544 75.7
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 8.8e-248 860.1 536 76.7
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 3.3e-247 858.2 542 76.4
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 7.4e-247 857.1 579 73.6
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 9.7e-247 856.7 551 75.7
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 9.7e-247 856.7 547 75.7
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 2.8e-246 855.1 561 74.7
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 4.8e-246 854.4 528 75.8
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 6.3e-246 854.0 539 74.6
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 6.3e-246 854.0 515 78.1
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 1.8e-245 852.4 539 75.7
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 2.4e-245 852.0 545 76.0
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 7.7e-244 847.0 520 77.3
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 7.7e-244 847.0 520 77.3
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 3.8e-243 844.7 522 77.4
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 6.5e-243 844.0 514 78.2
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 8.5e-243 843.6 522 77.4
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 1.1e-242 843.2 565 72.0
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 1.1e-242 843.2 543 75.5
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 1.5e-242 842.8 520 77.7
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 2.5e-242 842.0 522 76.4
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 7.2e-242 840.5 558 73.1
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 2.1e-241 839.0 520 76.9
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 6.7e-240 833.9 538 75.5
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 2.0e-239 832.4 526 76.4
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 4.4e-239 831.2 472 83.1
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 6.3e-238 827.4 545 74.5
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 1.4e-237 826.2 544 74.8
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 1.4e-237 826.2 537 74.3
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 1.8e-237 825.9 526 76.2
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 3.5e-236 821.6 512 77.0
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 4.5e-236 821.2 426 90.1
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 4.5e-236 821.2 506 77.5
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 4.5e-236 821.2 539 74.0
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 2.2e-235 818.9 484 78.9
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 3.0e-232 808.5 547 72.0
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 4.4e-231 804.7 535 72.5
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 1.7e-230 802.7 535 72.3
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 1.1e-229 800.0 540 72.0
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.8e-229 799.3 531 72.7
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 5.4e-229 797.7 541 73.6
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 6.8e-224 780.8 545 71.0
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 1.2e-223 780.0 500 75.2
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 1.5e-223 779.6 560 69.5
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 7.5e-223 777.3 560 69.5
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 1.7e-222 776.2 562 68.5
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 2.8e-222 775.4 541 70.8
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 5.9e-220 767.7 540 70.6
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 6.6e-219 764.2 541 70.1
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 5.6e-218 761.1 474 75.7
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 5.2e-208 728.0 536 67.5
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 8.9e-208 727.2 540 65.9
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 5.8e-207 724.5 401 82.8
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 6.0e-204 714.5 466 73.2
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 3.9e-195 685.3 432 75.9
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 2.0e-183 646.4 405 78.3
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 2.0e-183 646.4 401 74.8
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 9.3e-181 637.5 494 65.2
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 6.2e-177 624.8 332 85.8
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.9e-154 550.1 401 68.6
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 3.1e-152 542.7 472 55.9
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.5e-151 540.4 414 67.1
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 1.7e-150 537.0 495 54.5
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 7.2e-149 531.6 283 85.5
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 6.9e-136 488.4 346 68.5
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 1.1e-130 471.1 412 57.0
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 4.4e-130 469.2 454 52.6
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 2.0e-127 460.3 453 51.0
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 8.0e-116 421.8 337 65.0
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 1.6e-100 370.9 259 72.6
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 7.5e-90 335.5 181 85.1
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 5.6e-85 319.3 182 81.9
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 4.0e-83 313.2 234 70.5
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 6.8e-75 285.8 171 77.8
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 1.0e-54 218.8 134 73.9
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 2.1e-44 184.5 115 75.7
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 5.8e-42 176.4 102 79.4
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 1.9e-32 144.8 81 84.0
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 1.5e-26 125.2 66 86.4
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 6.3e-20 103.2 53 86.8
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 5.3e-19 100.1 58 77.6
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 1.2e-18 99.0 50 86.0
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 2.0e-18 98.2 60 73.3
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 2.0e-18 98.2 60 73.3
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 1.2e-10 72.4 79 45.6


User provided reference genes

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