Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 0.0e+00 1675.6 874 100.0
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 0.0e+00 1498.4 874 89.4
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 0.0e+00 1243.8 919 72.4
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 0.0e+00 1107.0 912 66.7
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 8.0e-307 1057.0 936 61.5
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 1.9e-268 929.5 916 56.9
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 1.7e-248 863.2 876 55.6
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 2.4e-247 859.4 868 55.0
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 2.7e-246 855.9 888 54.6
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 4.6e-246 855.1 862 55.0
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 3.0e-245 852.4 903 54.9
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 2.5e-244 849.4 872 53.9
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 1.6e-243 846.7 868 54.1
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 2.4e-242 842.8 907 53.5
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 2.6e-241 839.3 878 54.8
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 1.3e-240 837.0 882 53.3
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.7e-240 836.6 872 55.0
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 4.3e-236 822.0 892 52.1
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 1.1e-234 817.4 854 54.2
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 1.4e-234 817.0 913 52.7
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 5.3e-234 815.1 892 51.9
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 1.5e-233 813.5 852 54.2
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 1.5e-233 813.5 869 52.4
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 6.5e-232 808.1 897 52.4
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 2.5e-231 806.2 931 50.3
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 9.3e-231 804.3 849 53.8
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 1.2e-230 803.9 884 51.7
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 3.0e-229 799.3 875 52.7
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 5.1e-229 798.5 899 51.7
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 6.7e-229 798.1 899 51.1
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 1.5e-228 797.0 871 53.0
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 1.9e-228 796.6 848 52.8
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 1.9e-228 796.6 850 53.1
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 1.9e-228 796.6 865 53.5
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 4.3e-228 795.4 873 52.0
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 9.7e-228 794.3 881 52.4
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 1.0e-224 784.3 844 52.8
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 1.3e-224 783.9 830 53.7
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 1.7e-224 783.5 849 52.8
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 6.5e-224 781.6 844 52.0
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 1.4e-223 780.4 896 50.3
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 1.9e-223 780.0 982 48.1
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 2.5e-223 779.6 843 52.2
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 3.2e-223 779.2 870 51.1
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 3.2e-223 779.2 886 50.9
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 4.6e-222 775.4 888 49.7
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 1.3e-221 773.9 838 51.9
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 3.0e-221 772.7 852 52.5
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 6.7e-221 771.5 883 51.4
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 7.4e-220 768.1 899 49.6
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 2.4e-218 763.1 847 52.8
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 4.1e-218 762.3 849 53.7
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 6.9e-218 761.5 893 49.4
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 2.6e-217 759.6 890 49.8
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 2.6e-217 759.6 922 47.7
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 5.9e-217 758.4 743 56.5
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 1.9e-215 753.4 900 49.9
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 3.2e-215 752.7 887 49.9
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 4.6e-214 748.8 736 57.1
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 6.1e-214 748.4 841 49.1
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 1.4e-213 747.3 887 49.8
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 1.4e-213 747.3 890 50.0
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 2.3e-213 746.5 868 49.5
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 8.8e-213 744.6 876 49.0
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 2.6e-212 743.0 896 49.0
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 7.4e-212 741.5 841 49.8
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 1.7e-211 740.3 948 45.9
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 1.8e-210 736.9 845 50.9
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 3.4e-209 732.6 880 48.3
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 4.5e-209 732.3 900 48.0
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 1.3e-208 730.7 880 48.1
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 5.0e-208 728.8 891 48.0
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 1.4e-207 727.2 886 48.9
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 2.1e-206 723.4 968 45.2
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 1.8e-205 720.3 837 48.7
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 8.8e-205 718.0 897 47.0
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 5.3e-202 708.8 847 49.1
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 1.3e-200 704.1 920 45.8
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 2.2e-200 703.4 851 47.1
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 1.9e-199 700.3 888 46.4
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 5.5e-199 698.7 851 47.1
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 7.2e-199 698.4 904 47.2
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 9.4e-199 698.0 936 45.7
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 1.7e-195 687.2 855 47.3
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 1.4e-194 684.1 894 46.4
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 7.0e-194 681.8 738 52.8
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 2.7e-193 679.9 902 46.5
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 2.9e-192 676.4 930 44.1
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 1.0e-189 667.9 869 46.7
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 1.8e-189 667.2 892 46.5
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 1.3e-187 661.0 853 46.5
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 1.2e-185 654.4 887 45.0
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 2.6e-180 636.7 925 43.1
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 1.7e-179 634.0 882 44.2
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 6.3e-179 632.1 698 51.1
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 8.3e-179 631.7 711 52.5
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 1.0e-168 598.2 950 40.4
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 9.2e-162 575.1 650 50.0
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 8.1e-158 562.0 607 50.2
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 2.7e-153 547.0 694 48.0
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 1.2e-148 531.6 931 36.9
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 5.8e-148 529.3 841 40.7
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 6.4e-147 525.8 695 45.5
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 6.4e-147 525.8 853 40.0
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 9.3e-138 495.4 998 35.6
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 4.8e-134 483.0 880 37.0
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 1.1e-106 392.1 1088 30.2
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 5.5e-106 389.8 477 45.5
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 9.1e-93 345.9 255 66.3
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 2.0e-47 195.3 829 26.1
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 3.7e-46 191.0 846 24.6
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 1.6e-44 185.7 407 32.4
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 1.2e-41 176.0 324 34.3
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 3.1e-40 171.4 150 58.0
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 2.4e-32 145.2 136 58.1
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 4.6e-28 131.0 328 26.5
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 5.1e-27 127.5 339 32.4
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 1.8e-16 92.4 110 50.9
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 3.1e-16 91.7 337 24.9
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.2e-15 89.7 85 57.6
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 3.8e-14 84.7 87 52.9
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 2.2e-06 58.9 108 37.0
SHI25355 Sapria himalayana HOM05D006375 ORTHO05D000014 2.9e-06 58.5 110 35.5
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 4.9e-06 57.8 118 27.1


User provided reference genes

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