Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62002316 Chenopodium quinoa HOM05D003635 ORTHO05D004283 9.3e-198 693.3 352 100.0
AUR62023868 Chenopodium quinoa HOM05D003635 ORTHO05D004283 1.5e-142 510.0 366 75.4
AUR62022537 Chenopodium quinoa HOM05D003635 ORTHO05D004283 5.2e-124 448.4 365 66.6
EL10Ac2g03470 Beta vulgaris HOM05D003635 ORTHO05D004283 5.8e-123 444.9 365 66.0
Ah.09g234270 Amaranthus hybridus HOM05D003635 ORTHO05D004283 1.7e-122 443.4 365 66.0
Hund19994 Selenicereus undatus HOM05D003635 ORTHO05D004283 5.4e-121 438.3 365 64.9
Sc06g0001910 Simmondsia chinensis HOM05D003635 ORTHO05D004283 1.5e-110 403.7 370 61.9
Hma1.2p1_3477F.1_g336300 Hydrangea macrophylla HOM05D003635 ORTHO05D004283 5.6e-110 401.7 370 61.4
Oeu016870.1 Olea europaea HOM05D003635 ORTHO05D004283 5.6e-110 401.7 368 61.4
Lj8A91T61 Lonicera japonica HOM05D003635 ORTHO05D004283 7.3e-110 401.4 369 61.5
Dinv25952 Davidia involucrata HOM05D003635 ORTHO05D004283 1.3e-109 400.6 370 61.9
Dinv31402 Davidia involucrata HOM05D003635 ORTHO05D004283 2.1e-109 399.8 370 61.9
DCAR_015231 Daucus carota HOM05D003635 ORTHO05D004283 3.6e-109 399.1 369 61.0
Nitab4.5_0000426g0110 Nicotiana tabacum HOM05D003635 ORTHO05D004283 3.6e-109 399.1 369 60.7
CSS0019699 Camellia sinensis var. sinensis HOM05D003635 ORTHO05D004283 6.2e-109 398.3 371 60.9
SGA_v2.0_scaffold54G19634 Striga asiatica HOM05D003635 ORTHO05D004283 1.8e-108 396.7 369 61.5
CAN.G1557.8 Capsicum annuum HOM05D003635 ORTHO05D004283 3.1e-108 396.0 369 60.7
Nitab4.5_0012497g0010 Nicotiana tabacum HOM05D003635 ORTHO05D004283 3.1e-108 396.0 369 60.2
Cc00_g29200 Coffea canephora HOM05D003635 ORTHO05D004283 4.0e-108 395.6 370 60.8
Gohir.A10G210700 Gossypium hirsutum HOM05D003635 ORTHO05D004283 5.3e-108 395.2 372 60.5
Prupe.2G226500 Prunus persica HOM05D003635 ORTHO05D004283 5.3e-108 395.2 370 60.0
TAR369G0684 Trochodendron aralioides HOM05D003635 ORTHO05D004283 5.3e-108 395.2 372 59.9
DCAR_019162 Daucus carota HOM05D003635 ORTHO05D004283 9.0e-108 394.4 369 60.4
Nn2g12856 Nelumbo nucifera HOM05D003635 ORTHO05D004283 9.0e-108 394.4 373 60.9
Solyc04g010260.3 Solanum lycopersicum HOM05D003635 ORTHO05D004283 9.0e-108 394.4 369 60.4
Gohir.D10G219000 Gossypium hirsutum HOM05D003635 ORTHO05D004283 1.2e-107 394.0 372 60.5
Gorai.011G245700 Gossypium raimondii HOM05D003635 ORTHO05D004283 1.2e-107 394.0 372 60.2
Sopen04g005450 Solanum pennellii HOM05D003635 ORTHO05D004283 1.2e-107 394.0 369 60.4
Migut.N02978 Erythranthe guttata HOM05D003635 ORTHO05D004283 2.6e-107 392.9 369 60.7
Gohir.A05G351700 Gossypium hirsutum HOM05D003635 ORTHO05D004283 3.4e-107 392.5 372 59.9
FAN19G1456 Fragaria x ananassa HOM05D003635 ORTHO05D004283 4.4e-107 392.1 369 59.3
AUR62035965 Chenopodium quinoa HOM05D003635 ORTHO05D004283 5.8e-107 391.7 365 61.1
Gorai.012G068000 Gossypium raimondii HOM05D003635 ORTHO05D004283 5.8e-107 391.7 372 59.9
Rhsim09G0157900 Rhododendron simsii HOM05D003635 ORTHO05D004283 5.8e-107 391.7 370 59.7
PGSC0003DMG400030187 Solanum tuberosum HOM05D003635 ORTHO05D004283 5.8e-107 391.7 369 60.2
FAN23G1337 Fragaria x ananassa HOM05D003635 ORTHO05D004283 7.6e-107 391.3 367 59.4
FAN23G3063 Fragaria x ananassa HOM05D003635 ORTHO05D004283 7.6e-107 391.3 367 59.4
Nn2g10520 Nelumbo nucifera HOM05D003635 ORTHO05D004283 7.6e-107 391.3 372 59.7
RcHm_v2.0_Chr3g0492631 Rosa chinensis HOM05D003635 ORTHO05D004283 9.9e-107 391.0 370 60.8
FvH4_1g28630 Fragaria vesca HOM05D003635 ORTHO05D004283 1.3e-106 390.6 369 59.1
Lalb_Chr06g0164191 Lupinus albus HOM05D003635 ORTHO05D004283 1.3e-106 390.6 371 59.6
MSTRG.22089 Avicennia marina HOM05D003635 ORTHO05D004283 2.2e-106 389.8 369 60.2
FAN28G1205 Fragaria x ananassa HOM05D003635 ORTHO05D004283 2.2e-106 389.8 369 59.1
Lalb_Chr02g0143971 Lupinus albus HOM05D003635 ORTHO05D004283 2.2e-106 389.8 371 59.6
COL.COLO4_10911 Corchorus olitorius HOM05D003635 ORTHO05D004283 2.9e-106 389.4 371 60.1
Manes.07G109100 Manihot esculenta HOM05D003635 ORTHO05D004283 2.9e-106 389.4 371 60.4
Thecc.10G059000 Theobroma cacao HOM05D003635 ORTHO05D004283 2.9e-106 389.4 372 59.9
Duzib114G0516 Durio zibethinus HOM05D003635 ORTHO05D004283 3.8e-106 389.0 372 59.7
Peaxi162Scf00060g00511 Petunia axillaris HOM05D003635 ORTHO05D004283 3.8e-106 389.0 369 59.6
FAN26G2866 Fragaria x ananassa HOM05D003635 ORTHO05D004283 4.9e-106 388.7 370 60.0
Aqoxy2G04103 Aquilegia oxysepala HOM05D003635 ORTHO05D004283 6.4e-106 388.3 371 59.3
Aqoxy1G01641 Aquilegia oxysepala HOM05D003635 ORTHO05D004283 8.4e-106 387.9 371 59.3
HanXRQChr08g0228691 Helianthus annuus HOM05D003635 ORTHO05D004283 8.4e-106 387.9 369 59.1
HanXRQChr14g0437201 Helianthus annuus HOM05D003635 ORTHO05D004283 8.4e-106 387.9 369 59.1
Potri.010G212100 Populus trichocarpa HOM05D003635 ORTHO05D004283 8.4e-106 387.9 371 59.6
ECA233G0861 Erigeron canadensis HOM05D003635 ORTHO05D004283 1.1e-105 387.5 369 58.8
Potri.008G048900 Populus trichocarpa HOM05D003635 ORTHO05D004283 1.4e-105 387.1 371 59.6
SGA_v2.0_scaffold364G49990 Striga asiatica HOM05D003635 ORTHO05D004283 1.4e-105 387.1 369 59.6
Phvul.007G009600 Phaseolus vulgaris HOM05D003635 ORTHO05D004283 1.9e-105 386.7 372 59.9
VMungo0720G0614 Vigna mungo HOM05D003635 ORTHO05D004283 1.9e-105 386.7 372 59.7
THA.LOC104810010 Tarenaya hassleriana HOM05D003635 ORTHO05D004283 2.4e-105 386.3 372 58.6
arahy.Tifrunner.gnm1.ann1.4JT818 Arachis hypogaea HOM05D003635 ORTHO05D004283 5.4e-105 385.2 372 59.7
arahy.Tifrunner.gnm1.ann1.T81D7J Arachis hypogaea HOM05D003635 ORTHO05D004283 5.4e-105 385.2 372 59.7
Manes.10G036500 Manihot esculenta HOM05D003635 ORTHO05D004283 5.4e-105 385.2 372 59.7
Sed0026990 Sechium edule HOM05D003635 ORTHO05D004283 5.4e-105 385.2 371 58.2
THA.LOC104824257 Tarenaya hassleriana HOM05D003635 ORTHO05D004283 5.4e-105 385.2 372 58.9
Medtr4g115500 Medicago truncatula HOM05D003635 ORTHO05D004283 1.2e-104 384.0 372 58.9
CANSAT56G1536 Cannabis sativa HOM05D003635 ORTHO05D004283 1.6e-104 383.6 371 59.0
CARHR289060 Cardamine hirsuta HOM05D003635 ORTHO05D004283 2.1e-104 383.3 368 59.0
CiPaw.02G179700 Carya illinoinensis HOM05D003635 ORTHO05D004283 2.7e-104 382.9 371 59.0
Glyma.20G240500 Glycine max HOM05D003635 ORTHO05D004283 2.7e-104 382.9 372 58.6
CiPaw.01G281100 Carya illinoinensis HOM05D003635 ORTHO05D004283 3.5e-104 382.5 371 59.3
Ca_11305_v3 Cicer arietinum L. HOM05D003635 ORTHO05D004283 3.5e-104 382.5 372 58.9
Glyma.10G291300 Glycine max HOM05D003635 ORTHO05D004283 3.5e-104 382.5 372 59.1
Lsat_1_v5_gn_8_18261 Lactuca sativa HOM05D003635 ORTHO05D004283 4.6e-104 382.1 369 58.3
MD01G1119800 Malus domestica HOM05D003635 ORTHO05D004283 4.6e-104 382.1 369 58.0
Psat6g237600 Pisum sativum HOM05D003635 ORTHO05D004283 4.6e-104 382.1 372 58.9
Haze_16985 Corylus avellana HOM05D003635 ORTHO05D004283 6.0e-104 381.7 369 59.6
SalBow7G2745 Salvia bowleyana HOM05D003635 ORTHO05D004283 6.0e-104 381.7 369 59.1
AT3G55200 Arabidopsis thaliana HOM05D003635 ORTHO05D004283 7.9e-104 381.3 372 57.8
AT3G55220 Arabidopsis thaliana HOM05D003635 ORTHO05D004283 7.9e-104 381.3 372 57.8
Carub.0005s2188 Capsella rubella HOM05D003635 ORTHO05D004283 7.9e-104 381.3 370 58.1
Lj5g0001158 Lotus japonicus HOM05D003635 ORTHO05D004283 7.9e-104 381.3 372 58.3
HPP92_027161 Vanilla planifolia HOM05D003635 ORTHO05D004283 7.9e-104 381.3 374 58.6
ClCG02G013500 Citrullus lanatus HOM05D003635 ORTHO05D004283 1.0e-103 380.9 372 58.3
MELO3C023823.2 Cucumis melo HOM05D003635 ORTHO05D004283 1.0e-103 380.9 372 58.3
Duzib128G1000 Durio zibethinus HOM05D003635 ORTHO05D004283 1.0e-103 380.9 372 58.6
PGR142G3382 Punica granatum HOM05D003635 ORTHO05D004283 1.0e-103 380.9 370 59.2
Aa31LG10G9870 Aethionema arabicum HOM05D003635 ORTHO05D004283 2.3e-103 379.8 372 57.8
Atru.chr12.571 Acer truncatum HOM05D003635 ORTHO05D004283 3.9e-103 379.0 371 59.0
CsaV3_5G006650 Cucumis sativus L. HOM05D003635 ORTHO05D004283 3.9e-103 379.0 372 58.3
Eucgr.J01165 Eucalyptus grandis HOM05D003635 ORTHO05D004283 3.9e-103 379.0 372 58.9
Cfa001548 Carpinus fangiana HOM05D003635 ORTHO05D004283 5.1e-103 378.6 369 59.1
Cpa.g.sc1.324 Carica papaya HOM05D003635 ORTHO05D004283 1.1e-102 377.5 371 59.3
PSO384G4083 Papaver somniferum HOM05D003635 ORTHO05D004283 1.5e-102 377.1 381 57.2
QL08p057820 Quercus lobata HOM05D003635 ORTHO05D004283 1.9e-102 376.7 370 58.1
Sp5g07240 Schrenkiella parvula HOM05D003635 ORTHO05D004283 1.9e-102 376.7 372 57.3
Ciclev10030532m.g Citrus clementina HOM05D003635 ORTHO05D004283 9.6e-102 374.4 371 57.1
Thhalv10006588m.g Eutrema salsugineum HOM05D003635 ORTHO05D004283 9.6e-102 374.4 372 57.5
BraA01t04192Z Brassica rapa HOM05D003635 ORTHO05D004283 1.3e-101 374.0 372 56.5
TWI63G0503 Tripterygium wilfordii HOM05D003635 ORTHO05D004283 1.3e-101 374.0 372 58.9
ATR0820G062 Amborella trichopoda HOM05D003635 ORTHO05D004283 2.8e-101 372.9 372 57.3
SEGI_11055 Sequoiadendron giganteum HOM05D003635 ORTHO05D004283 4.8e-101 372.1 370 56.2
Medtr4g115810 Medicago truncatula HOM05D003635 ORTHO05D004283 6.2e-101 371.7 372 57.8
BcaB02g07694 Brassica carinata HOM05D003635 ORTHO05D004283 1.4e-100 370.5 372 56.2
BcaC09g48162 Brassica carinata HOM05D003635 ORTHO05D004283 1.8e-100 370.2 372 56.2
BolC1t05325H Brassica oleracea HOM05D003635 ORTHO05D004283 1.8e-100 370.2 372 56.2
PSO339G2718 Papaver somniferum HOM05D003635 ORTHO05D004283 1.8e-100 370.2 381 56.4
unitig_736.g22269 Utricularia gibba HOM05D003635 ORTHO05D004283 2.6e-99 366.3 369 56.4
Actinidia29205 Actinidia chinensis HOM05D003635 ORTHO05D004283 4.9e-98 362.1 341 58.7
CDE02G2560 Ceratophyllum demersum HOM05D003635 ORTHO05D004283 4.2e-97 359.0 361 57.1
Os02g0137400 Oryza sativa ssp. japonica HOM05D003635 ORTHO05D004283 4.2e-97 359.0 377 54.6
Pp3c4_5190 Physcomitrium patens HOM05D003635 ORTHO05D004283 4.6e-96 355.5 371 53.9
Zm00001eb231820 Zea mays HOM05D003635 ORTHO05D004283 6.7e-95 351.7 376 54.0
MD07G1189000 Malus domestica HOM05D003635 ORTHO05D004283 1.1e-94 350.9 298 63.4
FAN03G1481 Fragaria x ananassa HOM05D003635 ORTHO05D004283 7.4e-94 348.2 407 50.6
FvH4_7g20980 Fragaria vesca HOM05D003635 ORTHO05D004283 9.6e-94 347.8 406 50.7
FAN06G4735 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.6e-93 347.1 407 50.4
Mapoly0009s0019 Marchantia polymorpha HOM05D003635 ORTHO05D004283 2.8e-93 346.3 371 53.1
FAN06G2419 Fragaria x ananassa HOM05D003635 ORTHO05D004283 4.8e-93 345.5 407 50.1
FAN10G2700 Fragaria x ananassa HOM05D003635 ORTHO05D004283 5.3e-92 342.0 389 51.7
Pp3c12_11240 Physcomitrium patens HOM05D003635 ORTHO05D004283 4.5e-91 339.0 371 52.3
SMO116G0157 Selaginella moellendorffii HOM05D003635 ORTHO05D004283 7.6e-91 338.2 367 51.5
Pp3c16_16800 Physcomitrium patens HOM05D003635 ORTHO05D004283 2.2e-90 336.7 371 52.6
AagrBONN_evm.TU.Sc2ySwM_368.1182 Anthoceros agrestis HOM05D003635 ORTHO05D004283 3.8e-90 335.9 367 52.9
AL5G36324 Arabidopsis lyrata HOM05D003635 ORTHO05D004283 1.2e-88 330.9 343 55.4
Medtr6g013290 Medicago truncatula HOM05D003635 ORTHO05D004283 1.2e-88 330.9 366 53.3
Medtr1g115525 Medicago truncatula HOM05D003635 ORTHO05D004283 7.9e-88 328.2 372 52.4
CDE09G0269 Ceratophyllum demersum HOM05D003635 ORTHO05D004283 8.7e-87 324.7 350 55.7
Gohir.D04G061100 Gossypium hirsutum HOM05D003635 ORTHO05D004283 6.5e-82 308.5 342 54.4
HPP92_016710 Vanilla planifolia HOM05D003635 ORTHO05D004283 1.3e-79 300.8 325 55.4
HanXRQChr08g0234761 Helianthus annuus HOM05D003635 ORTHO05D004283 9.1e-68 261.5 230 60.9
AUR62002616 Chenopodium quinoa HOM05D003635 ORTHO05D004283 9.4e-65 251.5 181 69.6
CBR_g32401 Chara braunii HOM05D003635 ORTHO05D004283 3.9e-63 246.1 245 55.1
FAN10G2922 Fragaria x ananassa HOM05D003635 ORTHO05D004283 5.2e-55 219.2 267 50.9
MCO14G333 Micromonas commoda HOM05D003635 ORTHO05D004283 3.3e-54 216.5 376 36.7
GSVIVG01005970001 Vitis vinifera HOM05D003635 ORTHO05D004283 7.5e-54 215.3 307 46.9
Cre08.g372800 Chlamydomonas reinhardtii HOM05D003635 ORTHO05D004283 3.5e-51 206.5 380 35.5
Rhsim09G0158100 Rhododendron simsii HOM05D003635 ORTHO05D004283 2.7e-48 196.8 484 35.3
PRCOL_00000086 Prasinoderma coloniale HOM05D003635 ORTHO05D004283 1.1e-41 174.9 384 32.8
Sabra08G0035000 Salix brachista HOM05D003635 ORTHO05D004283 1.5e-38 164.5 119 72.3
RcHm_v2.0_Chr1g0365341 Rosa chinensis HOM05D003635 ORTHO05D004283 4.3e-33 146.4 108 70.4
TPR.G14006 Trifolium pratense HOM05D003635 ORTHO05D004283 3.6e-32 143.3 101 73.3
Haze_26580 Corylus avellana HOM05D003635 ORTHO05D004283 1.8e-31 141.0 331 31.1
TPR.G13999 Trifolium pratense HOM05D003635 ORTHO05D004283 1.4e-28 131.3 157 50.3
AL5G36340 Arabidopsis lyrata HOM05D003635 ORTHO05D004283 2.4e-28 130.6 157 49.7
AagrBONN_evm.TU.Sc2ySwM_362.982 Anthoceros agrestis HOM05D003635 ORTHO05D004283 9.2e-28 128.6 162 48.1
Actinidia02986 Actinidia chinensis HOM05D003635 ORTHO05D004283 1.0e-26 125.2 250 39.6
Actinidia13851 Actinidia chinensis HOM05D003635 ORTHO05D004283 6.2e-16 89.4 240 36.2
SEGI_11921 Sequoiadendron giganteum HOM05D003635 ORTHO05D004283 6.8e-15 85.9 88 52.3
Sabra10G0164300 Salix brachista HOM05D003635 ORTHO05D004283 8.9e-15 85.5 55 74.5
Cc00_g13950 Coffea canephora HOM05D003635 ORTHO05D004283 9.8e-14 82.0 45 88.9
AUR62044277 Chenopodium quinoa HOM05D003635 ORTHO05D004283 1.7e-13 81.3 45 88.9
MD07G1188800 Malus domestica HOM05D003635 ORTHO05D004283 8.3e-13 79.0 45 86.7
CARHR289050 Cardamine hirsuta HOM05D003635 ORTHO05D021615 1.4e-12 78.2 45 84.4
Carub.0005s2186 Capsella rubella HOM05D003635 ORTHO05D004283 3.2e-12 77.0 45 82.2
FAN01G1516 Fragaria x ananassa HOM05D003635 ORTHO05D004283 9.2e-12 75.5 45 82.2
FAN10G0554 Fragaria x ananassa HOM05D003635 ORTHO05D002227 9.2e-12 75.5 45 82.2
A09p07400 Brassica napus HOM05D003635 ORTHO05D004283 1.0e-10 72.0 81 54.3
AUR62039159 Chenopodium quinoa HOM05D000030 ORTHO05D000009 3.3e-09 67.0 45 73.3
Psat5g199040 Pisum sativum HOM05D003635 ORTHO05D004283 9.5e-09 65.5 139 35.3
Psat1g081240 Pisum sativum HOM05D000684 ORTHO05D006827 1.2e-08 65.1 43 72.1
BcaC04g23440 Brassica carinata HOM05D003635 ORTHO05D021615 2.1e-08 64.3 40 77.5
C09p08310 Brassica napus HOM05D003635 ORTHO05D021615 2.1e-08 64.3 40 77.5
BolC9t53741H Brassica oleracea HOM05D003635 ORTHO05D021615 2.1e-08 64.3 40 77.5
BcaC04g23439 Brassica carinata HOM05D011657 ORTHO05D021615 3.6e-08 63.5 49 65.3
BraA09t36394Z Brassica rapa HOM05D003635 ORTHO05D021615 6.2e-08 62.8 48 64.6
Psat7g159880 Pisum sativum HOM05D003635 ORTHO05D004283 1.1e-07 62.0 43 69.8
CDE02G0853 Ceratophyllum demersum HOM05D003635 ORTHO05D004283 2.6e-06 57.4 34 79.4
Zm00001eb101730 Zea mays HOM05D003635 ORTHO05D004283 2.6e-06 57.4 101 36.6
Zm00001eb128630 Zea mays HOM05D003635 ORTHO05D004283 5.8e-06 56.2 29 82.8


User provided reference genes

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