Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 0.0e+00 1158.3 567 100.0
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 7.6e-266 920.2 564 78.7
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 5.1e-262 907.5 567 77.8
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 6.2e-260 900.6 539 81.1
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 1.1e-259 899.8 524 82.1
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 2.4e-259 898.7 533 80.7
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 4.0e-259 897.9 529 81.5
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 4.0e-259 897.9 524 81.9
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 3.4e-258 894.8 529 81.1
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 6.4e-257 890.6 527 80.5
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 6.0e-255 884.0 539 79.2
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 1.0e-254 883.2 528 79.9
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 3.0e-254 881.7 522 80.8
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 5.1e-254 880.9 534 78.8
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 5.1e-254 880.9 534 78.3
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 8.7e-254 880.2 520 80.0
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 2.5e-253 878.6 531 79.1
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 3.3e-253 878.2 529 78.4
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 5.6e-253 877.5 521 80.4
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 1.3e-252 876.3 530 79.8
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 4.8e-252 874.4 569 76.3
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 6.2e-252 874.0 521 80.0
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 3.1e-251 871.7 543 77.3
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 4.0e-251 871.3 533 79.2
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 5.3e-251 870.9 522 78.9
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 9.0e-251 870.2 525 79.2
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 1.5e-250 869.4 536 78.2
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 1.5e-250 869.4 533 78.6
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 1.5e-250 869.4 526 78.1
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 3.4e-250 868.2 526 79.3
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 3.4e-250 868.2 536 78.2
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 3.4e-250 868.2 531 78.9
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 5.8e-250 867.5 532 79.3
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 5.8e-250 867.5 532 77.4
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 2.9e-249 865.1 535 77.0
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 2.9e-249 865.1 586 72.2
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 4.9e-249 864.4 518 79.5
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 8.4e-249 863.6 513 79.1
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 8.4e-249 863.6 521 78.9
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 1.1e-248 863.2 539 77.7
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.1e-248 863.2 569 74.0
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 1.4e-248 862.8 547 77.0
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 4.2e-248 861.3 532 76.9
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 5.4e-248 860.9 540 77.6
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 7.1e-248 860.5 555 75.0
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 9.3e-248 860.1 518 79.2
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 2.7e-247 858.6 533 77.1
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 2.7e-247 858.6 531 77.6
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 3.5e-247 858.2 536 76.9
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 6.0e-247 857.4 575 73.6
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 1.0e-246 856.7 526 77.4
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 1.0e-246 856.7 533 76.4
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 1.8e-246 855.9 527 76.7
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 2.3e-246 855.5 518 77.8
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 6.7e-246 854.0 539 75.7
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 1.5e-245 852.8 557 74.1
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 4.3e-245 851.3 559 73.9
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 7.4e-245 850.5 595 70.3
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 9.6e-245 850.1 515 78.6
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 1.3e-244 849.7 522 77.4
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 2.1e-244 849.0 526 76.6
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 1.1e-243 846.7 489 79.3
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 1.5e-242 842.8 522 76.8
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 4.5e-242 841.3 518 78.2
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 5.8e-242 840.9 537 75.8
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 5.8e-242 840.9 519 78.6
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 9.9e-242 840.1 522 76.4
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 1.3e-241 839.7 553 75.2
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 8.4e-241 837.0 540 75.0
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 1.1e-240 836.6 558 74.7
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 4.2e-240 834.7 533 75.2
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 4.2e-240 834.7 533 75.2
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 5.5e-240 834.3 537 75.6
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 7.1e-240 833.9 533 76.4
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 9.3e-240 833.6 517 76.2
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 2.7e-239 832.0 533 74.7
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 1.0e-238 830.1 534 75.5
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 1.8e-238 829.3 530 75.7
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 2.3e-238 828.9 536 75.2
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 6.7e-238 827.4 547 72.9
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 1.1e-237 826.6 483 80.5
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 3.3e-237 825.1 506 77.7
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 2.4e-235 818.9 505 77.2
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 5.3e-235 817.8 534 76.2
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 1.2e-234 816.6 538 73.4
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 1.5e-234 816.2 469 80.6
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 2.2e-233 812.4 540 72.6
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 2.9e-233 812.0 534 74.5
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 3.8e-233 811.6 541 75.0
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 4.9e-233 811.2 533 74.9
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 4.2e-232 808.1 526 74.9
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 1.6e-231 806.2 537 73.7
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 3.5e-231 805.1 518 75.1
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 2.8e-228 795.4 538 73.4
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 1.4e-227 793.1 539 72.7
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 2.4e-227 792.3 539 72.5
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 3.1e-227 792.0 554 70.9
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 1.2e-226 790.0 554 70.9
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 1.1e-224 783.5 530 70.9
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 9.4e-224 780.4 559 69.8
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 1.6e-223 779.6 549 70.9
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.5e-221 773.1 473 76.3
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 6.3e-220 767.7 530 69.8
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 3.1e-219 765.4 533 69.8
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 1.2e-207 726.9 538 66.2
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 2.7e-207 725.7 464 75.4
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 1.5e-205 719.9 426 77.5
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 2.6e-205 719.2 528 67.2
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 9.1e-203 710.7 398 81.2
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 1.4e-198 696.8 425 79.3
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 1.4e-182 643.7 410 77.1
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 3.0e-182 642.5 398 75.9
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 2.4e-179 632.9 516 62.8
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 3.5e-170 602.4 331 81.9
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 3.0e-153 546.2 409 66.7
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 5.1e-153 545.4 477 57.4
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 9.6e-152 541.2 466 55.8
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 2.0e-149 533.5 283 84.1
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 3.4e-149 532.7 398 67.8
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 3.2e-131 473.0 463 51.4
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 5.4e-131 472.2 451 52.3
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 2.7e-130 469.9 346 64.7
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 5.1e-129 465.7 367 61.3
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 4.8e-111 406.0 341 62.8
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 2.5e-99 367.1 277 68.2
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 2.8e-87 327.0 181 80.1
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.2e-85 321.6 228 73.2
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 4.5e-85 319.7 182 80.8
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.5e-75 288.1 172 77.3
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 3.1e-57 227.3 134 77.6
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 1.0e-44 185.7 117 76.1
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 1.2e-40 172.2 102 75.5
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 3.2e-30 137.5 80 75.0
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 4.0e-25 120.6 68 79.4
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 1.3e-20 105.5 53 88.7
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 5.1e-20 103.6 57 80.7
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 4.3e-19 100.5 60 71.7
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 4.3e-19 100.5 60 71.7
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 1.3e-18 99.0 50 84.0
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 8.1e-10 69.7 78 44.9
CBR_g21303 Chara braunii HOM05D001677 ORTHO05D000002 6.5e-07 60.1 183 27.3


User provided reference genes

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