Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 1.2e-121 439.9 218 100.0
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 9.9e-65 250.8 212 64.6
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 2.3e-61 239.6 207 60.9
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 4.3e-60 235.3 209 60.8
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 6.9e-58 228.0 207 57.5
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.8e-57 224.9 213 61.0
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 7.6e-57 224.6 212 55.7
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.3e-56 223.8 212 59.9
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 2.2e-56 223.0 210 58.1
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 6.4e-56 221.5 212 59.9
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 1.9e-55 219.9 207 58.9
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 3.2e-55 219.2 212 58.5
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.6e-54 216.9 210 56.2
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 2.1e-54 216.5 207 58.0
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 2.7e-54 216.1 214 58.9
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 7.9e-54 214.5 213 58.7
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 7.9e-54 214.5 211 57.3
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 7.9e-54 214.5 208 56.7
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 2.3e-53 213.0 207 57.5
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 3.0e-53 212.6 209 55.0
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 3.9e-53 212.2 209 55.5
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 3.9e-53 212.2 209 54.5
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 5.1e-53 211.8 207 56.0
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 5.1e-53 211.8 209 55.5
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 1.5e-52 210.3 214 54.7
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.9e-52 209.9 214 55.6
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 1.9e-52 209.9 210 54.8
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 2.5e-52 209.5 207 56.0
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 2.5e-52 209.5 206 57.3
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 2.5e-52 209.5 207 57.0
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 2.5e-52 209.5 208 56.2
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.3e-52 208.8 214 56.1
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 4.3e-52 208.8 214 55.6
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 4.3e-52 208.8 207 55.1
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 7.4e-52 208.0 215 55.3
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 9.6e-52 207.6 207 56.0
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 9.6e-52 207.6 210 54.8
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.3e-51 207.2 214 55.1
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 1.3e-51 207.2 216 52.3
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 1.3e-51 207.2 211 56.9
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 1.6e-51 206.8 212 52.8
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 2.8e-51 206.1 204 56.4
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 3.7e-51 205.7 208 57.7
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 1.4e-50 203.8 212 55.2
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 1.4e-50 203.8 209 54.1
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 1.8e-50 203.4 207 54.6
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 2.4e-50 203.0 207 55.1
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 2.4e-50 203.0 209 56.5
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 2.4e-50 203.0 216 55.1
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 3.1e-50 202.6 214 53.7
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 3.1e-50 202.6 214 53.7
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 3.1e-50 202.6 209 53.1
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 4.0e-50 202.2 213 53.1
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 5.3e-50 201.8 207 53.6
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 6.9e-50 201.4 212 52.4
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 9.0e-50 201.1 212 52.4
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 9.0e-50 201.1 207 55.1
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 1.2e-49 200.7 210 53.3
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 1.5e-49 200.3 217 51.6
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 1.5e-49 200.3 206 55.3
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 2.6e-49 199.5 208 53.8
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 2.6e-49 199.5 206 53.4
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 3.4e-49 199.1 212 51.9
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 3.4e-49 199.1 212 53.8
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 3.4e-49 199.1 208 52.4
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 4.5e-49 198.7 207 52.2
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 5.8e-49 198.4 205 55.1
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 7.6e-49 198.0 212 51.4
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 7.6e-49 198.0 218 51.8
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.0e-48 197.6 208 54.3
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 1.3e-48 197.2 210 52.4
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 1.3e-48 197.2 207 55.6
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 2.2e-48 196.4 212 50.9
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 2.2e-48 196.4 208 52.4
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 4.9e-48 195.3 206 51.0
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 4.9e-48 195.3 244 48.4
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 6.5e-48 194.9 206 52.4
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 8.4e-48 194.5 206 51.5
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 1.1e-47 194.1 212 50.5
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.5e-47 193.0 211 51.7
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 4.2e-47 192.2 222 50.9
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 1.2e-46 190.7 240 47.5
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.2e-46 190.7 208 51.4
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 1.2e-46 190.7 208 50.0
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 2.1e-46 189.9 188 53.7
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 3.0e-45 186.0 133 68.4
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 3.9e-45 185.7 208 51.0
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 5.1e-45 185.3 123 70.7
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 8.7e-45 184.5 243 46.5
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 1.9e-44 183.3 206 51.9
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 7.4e-44 181.4 216 49.5
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 7.4e-44 181.4 214 51.9
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 2.1e-43 179.9 193 53.4
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 6.3e-43 178.3 202 50.5
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 7.6e-41 171.4 203 47.8
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 3.8e-40 169.1 197 50.3
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 5.5e-39 165.2 118 66.9
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 7.2e-39 164.9 214 46.3
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 1.3e-37 160.6 128 62.5
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 1.6e-35 153.7 189 50.3
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.4e-34 150.6 207 48.8
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 2.4e-34 149.8 207 46.9
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 4.1e-34 149.1 208 43.8
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 7.7e-33 144.8 160 55.0
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 7.7e-33 144.8 206 45.1
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.7e-32 143.7 172 47.7
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 2.2e-32 143.3 159 54.1
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 2.2e-32 143.3 133 57.1
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.9e-32 142.9 159 54.7
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 5.0e-32 142.1 216 42.6
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 5.5e-31 138.7 207 43.0
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.0e-28 130.2 122 57.4
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 1.7e-27 127.1 157 49.7
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 1.1e-26 124.4 176 47.2
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 3.4e-25 119.4 157 47.8
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 6.5e-24 115.2 78 70.5
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 6.1e-22 108.6 210 36.7
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 5.2e-21 105.5 70 75.7
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 8.8e-21 104.8 80 58.8
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 6.3e-19 98.6 67 61.2
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 5.9e-17 92.0 123 45.5
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 6.5e-16 88.6 152 38.8
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 4.7e-14 82.4 57 63.2
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 8.0e-14 81.6 60 70.0
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 1.0e-13 81.3 53 77.4
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.2e-12 77.8 45 75.6
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 5.7e-12 75.5 56 69.6
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 5.7e-12 75.5 70 60.0
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.3e-11 74.3 48 79.2
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 1.3e-11 74.3 53 62.3
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 1.7e-11 73.9 46 69.6
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.7e-11 73.9 48 79.2
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.7e-11 72.8 48 77.1
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.3e-10 68.9 87 50.6
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.5e-09 66.2 64 57.8
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 2.1e-06 57.0 33 81.8


User provided reference genes

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