Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0820G074 Amborella trichopoda HOM05D003289 ORTHO05D004594 1.8e-240 835.5 405 100.0
TAR636G3131 Trochodendron aralioides HOM05D003289 ORTHO05D004594 9.5e-162 573.9 407 68.3
SEGI_26591 Sequoiadendron giganteum HOM05D003289 ORTHO05D004594 9.8e-159 563.9 408 67.2
PSO384G0460 Papaver somniferum HOM05D003289 ORTHO05D004594 1.4e-157 560.1 406 64.8
Nn2g14071 Nelumbo nucifera HOM05D003289 ORTHO05D004594 4.1e-157 558.5 406 64.5
PSO425G0048 Papaver somniferum HOM05D003289 ORTHO05D004594 1.6e-156 556.6 406 64.3
Lj2C988G5 Lonicera japonica HOM05D003289 ORTHO05D004594 2.3e-155 552.7 409 66.0
Actinidia07230 Actinidia chinensis HOM05D003289 ORTHO05D004594 7.3e-154 547.7 407 66.1
Os02g0511901 Oryza sativa ssp. japonica HOM05D003289 ORTHO05D004594 1.8e-152 543.1 406 62.8
CSS0049320 Camellia sinensis var. sinensis HOM05D003289 ORTHO05D004594 4.0e-152 542.0 407 65.8
Aqoxy2G01337 Aquilegia oxysepala HOM05D003289 ORTHO05D004594 2.6e-151 539.3 406 62.1
QL01p013239 Quercus lobata HOM05D003289 ORTHO05D004594 4.4e-151 538.5 407 64.4
GSVIVG01031365001 Vitis vinifera HOM05D003289 ORTHO05D004594 3.7e-150 535.4 406 63.8
Ca_19261_v3 Cicer arietinum L. HOM05D003289 ORTHO05D004594 8.3e-150 534.3 407 63.6
Glyma.12G087000 Glycine max HOM05D003289 ORTHO05D004594 3.2e-149 532.3 406 62.8
Zm00001eb241860 Zea mays HOM05D003289 ORTHO05D004594 3.2e-149 532.3 406 64.8
Atru.chr3.3336 Acer truncatum HOM05D003289 ORTHO05D004594 7.1e-149 531.2 407 63.9
Duzib168G1226 Durio zibethinus HOM05D003289 ORTHO05D004594 1.2e-148 530.4 410 63.4
COL.COLO4_19937 Corchorus olitorius HOM05D003289 ORTHO05D004594 3.5e-148 528.9 407 63.4
HPP92_025278 Vanilla planifolia HOM05D003289 ORTHO05D004594 7.8e-148 527.7 405 63.5
CANSAT54G1671 Cannabis sativa HOM05D003289 ORTHO05D004594 2.3e-147 526.2 407 63.6
TPR.G15595 Trifolium pratense HOM05D003289 ORTHO05D004594 3.0e-147 525.8 404 63.4
Thecc.09G288000 Theobroma cacao HOM05D003289 ORTHO05D004594 8.6e-147 524.2 407 62.9
Lalb_Chr19g0136661 Lupinus albus HOM05D003289 ORTHO05D004594 1.1e-146 523.9 407 62.9
MBI15_g14875_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 1.1e-146 523.9 368 69.0
Gohir.D05G085400 Gossypium hirsutum HOM05D003289 ORTHO05D004594 1.9e-146 523.1 410 62.2
Sabra04G0125000 Salix brachista HOM05D003289 ORTHO05D004594 7.3e-146 521.2 411 62.0
Gohir.A05G082500 Gossypium hirsutum HOM05D003289 ORTHO05D004594 1.6e-145 520.0 410 62.0
Gorai.009G087200 Gossypium raimondii HOM05D003289 ORTHO05D004594 2.1e-145 519.6 410 62.0
Ciclev10027662m.g Citrus clementina HOM05D003289 ORTHO05D004594 3.6e-145 518.8 403 62.5
Medtr4g054980 Medicago truncatula HOM05D003289 ORTHO05D004594 4.7e-145 518.5 407 61.9
Potri.004G185700 Populus trichocarpa HOM05D003289 ORTHO05D004594 4.7e-145 518.5 409 61.6
Lj3g0000987 Lotus japonicus HOM05D003289 ORTHO05D004594 1.1e-144 517.3 406 62.3
VMungo1127G1826 Vigna mungo HOM05D003289 ORTHO05D004594 3.1e-144 515.8 407 61.7
Psat7g153200 Pisum sativum HOM05D003289 ORTHO05D004594 3.4e-143 512.3 407 60.9
Sopen11g026820 Solanum pennellii HOM05D003289 ORTHO05D004594 4.4e-143 511.9 410 61.7
Solyc11g067140.2 Solanum lycopersicum HOM05D003289 ORTHO05D004594 9.9e-143 510.8 410 61.7
CAN.G644.7 Capsicum annuum HOM05D003289 ORTHO05D004594 2.9e-142 509.2 410 60.5
Prupe.6G124200 Prunus persica HOM05D003289 ORTHO05D004594 3.8e-142 508.8 407 60.0
Cc01_g09530 Coffea canephora HOM05D003289 ORTHO05D004594 1.4e-141 506.9 406 61.6
Peaxi162Scf00544g00919 Petunia axillaris HOM05D003289 ORTHO05D004594 5.4e-141 505.0 405 60.2
Phvul.011G091900 Phaseolus vulgaris HOM05D003289 ORTHO05D004594 5.4e-141 505.0 406 60.8
Pp3c13_4500 Physcomitrium patens HOM05D003289 ORTHO05D004594 1.6e-140 503.4 410 60.5
Nitab4.5_0003532g0050 Nicotiana tabacum HOM05D003289 ORTHO05D004594 3.5e-140 502.3 406 59.9
Eucgr.B03882 Eucalyptus grandis HOM05D003289 ORTHO05D004594 4.6e-140 501.9 406 59.6
ClCG02G022050 Citrullus lanatus HOM05D003289 ORTHO05D004594 1.7e-139 500.0 405 60.7
CsaV3_6G014890 Cucumis sativus L. HOM05D003289 ORTHO05D004594 5.1e-139 498.4 405 59.8
Lsat_1_v5_gn_6_39840 Lactuca sativa HOM05D003289 ORTHO05D004594 5.1e-139 498.4 408 61.5
MELO3C021434.2 Cucumis melo HOM05D003289 ORTHO05D004594 6.6e-139 498.0 405 59.8
Haze_23425 Corylus avellana HOM05D003289 ORTHO05D004594 1.1e-138 497.3 436 58.3
Sed0008797 Sechium edule HOM05D003289 ORTHO05D004594 1.5e-138 496.9 408 59.6
Lsat_1_v5_gn_6_39380 Lactuca sativa HOM05D003289 ORTHO05D004594 1.9e-138 496.5 407 59.5
Migut.N02501 Erythranthe guttata HOM05D003289 ORTHO05D004594 2.5e-138 496.1 406 58.6
FAN11G3202 Fragaria x ananassa HOM05D003289 ORTHO05D004594 9.6e-138 494.2 408 60.0
MD11G1160700 Malus domestica HOM05D003289 ORTHO05D004594 9.6e-138 494.2 406 58.6
FvH4_3g29570 Fragaria vesca HOM05D003289 ORTHO05D004594 1.2e-137 493.8 408 60.0
SGA_v2.0_scaffold102G29919 Striga asiatica HOM05D003289 ORTHO05D004594 2.8e-137 492.7 406 59.1
MSTRG.17714 Avicennia marina HOM05D003289 ORTHO05D004594 3.6e-137 492.3 407 59.0
EL10Ac7g15792 Beta vulgaris HOM05D003289 ORTHO05D004594 8.1e-137 491.1 406 58.6
RcHm_v2.0_Chr5g0054631 Rosa chinensis HOM05D003289 ORTHO05D004594 2.4e-136 489.6 407 60.2
FAN16G3075 Fragaria x ananassa HOM05D003289 ORTHO05D004594 4.0e-136 488.8 408 59.3
AUR62039240 Chenopodium quinoa HOM05D003289 ORTHO05D004594 5.2e-136 488.4 407 57.2
SalBow3G0618 Salvia bowleyana HOM05D003289 ORTHO05D004594 1.5e-135 486.9 407 58.7
MD03G1139200 Malus domestica HOM05D003289 ORTHO05D004594 2.0e-135 486.5 407 57.7
Oeu031488.2 Olea europaea HOM05D003289 ORTHO05D004594 2.6e-135 486.1 419 57.3
Mapoly0006s0290 Marchantia polymorpha HOM05D003289 ORTHO05D004594 2.2e-134 483.0 407 58.2
THA.LOC104826411 Tarenaya hassleriana HOM05D003289 ORTHO05D004594 6.4e-134 481.5 404 59.7
Hund20868 Selenicereus undatus HOM05D003289 ORTHO05D004594 3.2e-133 479.2 408 58.8
PGR102G2277 Punica granatum HOM05D003289 ORTHO05D004594 3.0e-131 472.6 410 57.8
Rhsim13G0107600 Rhododendron simsii HOM05D003289 ORTHO05D004594 1.9e-130 469.9 407 58.0
CDE02G3060 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 6.9e-128 461.5 394 56.9
vmacro03295 Vaccinium macrocarpon HOM05D003289 ORTHO05D004594 1.5e-127 460.3 406 56.9
HanXRQChr05g0145141 Helianthus annuus HOM05D003289 ORTHO05D004594 6.0e-124 448.4 408 55.9
SMO144G0205 Selaginella moellendorffii HOM05D003289 ORTHO05D004594 6.0e-124 448.4 379 57.3
CAN.G1177.9 Capsicum annuum HOM05D003289 ORTHO05D004594 3.0e-123 446.0 378 58.2
arahy.Tifrunner.gnm1.ann1.B2Y78K Arachis hypogaea HOM05D003289 ORTHO05D004594 6.7e-123 444.9 504 47.8
DCAR_012181 Daucus carota HOM05D003289 ORTHO05D004594 8.7e-123 444.5 343 61.2
CBR_g8396 Chara braunii HOM05D003289 ORTHO05D004594 7.4e-122 441.4 431 52.7
SHI18830 Sapria himalayana HOM05D003289 ORTHO05D004594 2.1e-121 439.9 407 54.8
arahy.Tifrunner.gnm1.ann1.F25EMM Arachis hypogaea HOM05D003289 ORTHO05D004594 1.4e-117 427.2 407 53.8
SGA_v2.0_scaffold424G51468 Striga asiatica HOM05D003289 ORTHO05D004594 2.4e-117 426.4 408 53.4
unitig_22.g6642 Utricularia gibba HOM05D003289 ORTHO05D004594 2.4e-117 426.4 407 53.3
arahy.Tifrunner.gnm1.ann1.U78W58 Arachis hypogaea HOM05D003289 ORTHO05D004594 5.5e-117 425.2 378 57.4
AUR62009793 Chenopodium quinoa HOM05D003289 ORTHO05D004594 3.9e-115 419.1 349 58.2
HanXRQChr09g0249481 Helianthus annuus HOM05D003289 ORTHO05D004594 1.3e-113 414.1 408 53.2
ClCG09G020580 Citrullus lanatus HOM05D003289 ORTHO05D004594 2.1e-113 413.3 404 54.0
ECA233G3796 Erigeron canadensis HOM05D003289 ORTHO05D004594 2.2e-110 403.3 347 58.5
AagrBONN_evm.TU.Sc2ySwM_340.389 Anthoceros agrestis HOM05D003289 ORTHO05D004594 1.0e-107 394.4 417 47.5
Aa31LG2G19310 Aethionema arabicum HOM05D003289 ORTHO05D004594 1.8e-104 383.6 403 50.1
Thhalv10006524m.g Eutrema salsugineum HOM05D003289 ORTHO05D004594 1.3e-102 377.5 403 49.4
A06p05280 Brassica napus HOM05D003289 ORTHO05D004594 8.5e-102 374.8 403 48.1
C05p06350 Brassica napus HOM05D003289 ORTHO05D004594 8.5e-102 374.8 403 48.1
AL1G18660 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 3.2e-101 372.9 402 48.0
AT1G08260 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 5.5e-101 372.1 402 47.5
CARHR008100 Cardamine hirsuta HOM05D003289 ORTHO05D004594 3.6e-100 369.4 403 47.6
BolC5t29391H Brassica oleracea HOM05D003289 ORTHO05D004594 3.9e-99 365.9 417 46.8
Carub.0001s0761 Capsella rubella HOM05D003289 ORTHO05D004594 1.1e-98 364.4 403 47.1
Sp1g06890 Schrenkiella parvula HOM05D003289 ORTHO05D004594 1.1e-98 364.4 403 47.9
BraA06t23736Z Brassica rapa HOM05D003289 ORTHO05D004594 2.5e-98 363.2 417 46.3
AL4G20650 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 3.3e-98 362.8 402 48.8
AT2G27120 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 8.2e-97 358.2 402 48.0
Manes.04G006100 Manihot esculenta HOM05D003289 ORTHO05D004594 1.8e-96 357.1 407 47.7
AL4G20810 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 7.7e-95 351.7 386 48.4
CiPaw.13G138800 Carya illinoinensis HOM05D003289 ORTHO05D004594 1.0e-83 314.7 233 61.8
MELO3C033806.2 Cucumis melo HOM05D003289 ORTHO05D004594 2.0e-79 300.4 315 50.8
Nitab4.5_0004240g0020 Nicotiana tabacum HOM05D003289 ORTHO05D004594 1.2e-76 291.2 252 59.1
MCO02G508 Micromonas commoda HOM05D003289 ORTHO05D004594 1.1e-72 278.1 490 34.5
Cpa.g.sc32.131 Carica papaya HOM05D003289 ORTHO05D004594 2.3e-67 260.4 252 53.6
BcaB07g34067 Brassica carinata HOM05D003289 ORTHO05D004594 4.8e-65 252.7 302 46.7
Cre03.g179961 Chlamydomonas reinhardtii HOM05D003289 ORTHO05D004594 2.3e-59 233.8 445 32.4
Rhsim05G0032400 Rhododendron simsii HOM05D003289 ORTHO05D004594 2.8e-57 226.9 234 51.7
PRCOL_00004747 Prasinoderma coloniale HOM05D003289 ORTHO05D004594 5.0e-54 216.1 417 30.2
Cfa025881 Carpinus fangiana HOM05D003289 ORTHO05D004594 5.4e-40 169.5 405 26.2
BcaB03g13343 Brassica carinata HOM05D003289 ORTHO05D004594 4.3e-37 159.8 126 58.7
BcaC07g41675 Brassica carinata HOM05D003289 ORTHO05D026451 7.5e-34 149.1 224 42.0
Sc21g0007220 Simmondsia chinensis HOM05D003289 ORTHO05D004594 1.3e-33 148.3 124 63.7
CARHR055750 Cardamine hirsuta HOM05D003289 ORTHO05D004594 9.2e-32 142.1 115 55.7
CiPaw.13G138900 Carya illinoinensis HOM05D003289 ORTHO05D004594 4.0e-27 126.7 75 78.7
C08p47080 Brassica napus HOM05D003555 ORTHO05D004542 4.6e-23 113.2 113 50.4
BraA09t41708Z Brassica rapa HOM05D003555 ORTHO05D004542 2.3e-22 110.9 88 54.5
BolC8t52247H Brassica oleracea HOM05D003555 ORTHO05D004542 3.9e-22 110.2 104 49.0
DCAR_017672 Daucus carota HOM05D003289 ORTHO05D004594 4.0e-19 100.1 82 57.3
SEGI_20214 Sequoiadendron giganteum HOM05D003289 ORTHO05D000003 1.1e-16 92.0 80 53.8
QL02p000117 Quercus lobata HOM05D003289 ORTHO05D004594 1.0e-14 85.5 53 79.2
SEGI_12002 Sequoiadendron giganteum HOM05D003289 ORTHO05D004594 1.0e-14 85.5 80 51.2
Aa31LG1G180 Aethionema arabicum HOM05D003289 ORTHO05D004594 6.9e-11 72.8 99 40.4
CARHR055740 Cardamine hirsuta HOM05D003289 ORTHO05D026451 9.0e-11 72.4 96 45.8
Aa31LG1G190 Aethionema arabicum HOM05D003289 ORTHO05D026451 2.7e-07 60.8 55 60.0
A09p63570 Brassica napus HOM05D003289 ORTHO05D026451 3.0e-06 57.4 50 62.0


User provided reference genes

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