Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0796G164 Amborella trichopoda HOM05D007625 ORTHO05D009738 4.3e-175 617.8 307 100.0
TAR633G2367 Trochodendron aralioides HOM05D007625 ORTHO05D009738 5.4e-93 345.1 253 66.0
MBI18_g04687_MAGBIO Magnolia biondii HOM05D007625 ORTHO05D009738 7.9e-92 341.3 254 63.8
PGR031G0588 Punica granatum HOM05D007625 ORTHO05D009738 4.3e-90 335.5 254 61.8
Atru.chr4.2832 Acer truncatum HOM05D007625 ORTHO05D009738 2.1e-89 333.2 248 64.1
QL06p008815 Quercus lobata HOM05D007625 ORTHO05D009738 4.8e-89 332.0 254 63.4
BcaB06g25757 Brassica carinata HOM05D007625 ORTHO05D009738 6.2e-89 331.6 252 65.1
arahy.Tifrunner.gnm1.ann1.96EVWK Arachis hypogaea HOM05D007625 ORTHO05D009738 1.1e-88 330.9 257 61.9
arahy.Tifrunner.gnm1.ann1.QKB3E6 Arachis hypogaea HOM05D007625 ORTHO05D009738 1.4e-88 330.5 257 61.5
Lj4g0027770 Lotus japonicus HOM05D007625 ORTHO05D009738 1.8e-88 330.1 254 62.2
Actinidia00027 Actinidia chinensis HOM05D007625 ORTHO05D009738 5.3e-88 328.6 254 63.8
GSVIVG01017755001 Vitis vinifera HOM05D007625 ORTHO05D009738 1.5e-87 327.0 241 66.0
Ciclev10005679m.g Citrus clementina HOM05D007625 ORTHO05D009738 2.6e-87 326.2 249 63.5
Thecc.04G284200 Theobroma cacao HOM05D007625 ORTHO05D009738 2.6e-87 326.2 255 61.6
TWI09G0101 Tripterygium wilfordii HOM05D007625 ORTHO05D009738 2.6e-87 326.2 259 62.2
PSO017G7039 Papaver somniferum HOM05D007625 ORTHO05D009738 3.4e-87 325.9 257 61.1
SGA_v2.0_scaffold428G51521 Striga asiatica HOM05D007625 ORTHO05D009738 4.5e-87 325.5 248 64.1
CARHR091770 Cardamine hirsuta HOM05D007625 ORTHO05D009738 5.8e-87 325.1 253 62.1
Hund20557 Selenicereus undatus HOM05D007625 ORTHO05D009738 7.6e-87 324.7 252 62.7
MD13G1169000 Malus domestica HOM05D007625 ORTHO05D009738 2.2e-86 323.2 250 60.8
Medtr4g119840 Medicago truncatula HOM05D007625 ORTHO05D009738 2.2e-86 323.2 254 60.2
Lalb_Chr13g0303611 Lupinus albus HOM05D007625 ORTHO05D009738 2.9e-86 322.8 276 57.6
Sabra10G0014200 Salix brachista HOM05D007625 ORTHO05D009738 2.9e-86 322.8 257 62.6
Duzib212G0442 Durio zibethinus HOM05D007625 ORTHO05D009738 3.8e-86 322.4 255 60.4
Thhalv10021369m.g Eutrema salsugineum HOM05D007625 ORTHO05D009738 6.4e-86 321.6 253 62.1
Gohir.A09G239300 Gossypium hirsutum HOM05D007625 ORTHO05D009738 6.4e-86 321.6 249 61.4
Glyma.07G247900 Glycine max HOM05D007625 ORTHO05D009738 8.4e-86 321.2 255 60.0
VMungo1215G1867 Vigna mungo HOM05D007625 ORTHO05D009738 1.9e-85 320.1 250 61.6
CANSAT78G1499 Cannabis sativa HOM05D007625 ORTHO05D009738 2.4e-85 319.7 256 61.3
Sp3g14890 Schrenkiella parvula HOM05D007625 ORTHO05D009738 2.4e-85 319.7 253 62.1
CSS0007271 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 3.2e-85 319.3 250 63.6
Migut.N00092 Erythranthe guttata HOM05D007625 ORTHO05D009738 3.2e-85 319.3 249 61.8
Gohir.D09G240200 Gossypium hirsutum HOM05D007625 ORTHO05D009738 3.2e-85 319.3 257 60.7
Manes.03G194700 Manihot esculenta HOM05D007625 ORTHO05D009738 3.2e-85 319.3 255 63.1
Aqoxy2G02997 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 4.2e-85 318.9 255 60.4
Prupe.1G137400 Prunus persica HOM05D007625 ORTHO05D009738 7.1e-85 318.2 252 60.3
AL3G29430 Arabidopsis lyrata HOM05D007625 ORTHO05D009738 2.7e-84 316.2 253 60.5
Ca_21505_v3 Cicer arietinum L. HOM05D007625 ORTHO05D009738 2.7e-84 316.2 257 58.8
Psat4g025880 Pisum sativum HOM05D007625 ORTHO05D009738 3.5e-84 315.8 254 58.7
BolC5t33727H Brassica oleracea HOM05D007625 ORTHO05D009738 4.6e-84 315.5 274 58.8
FAN07G2640 Fragaria x ananassa HOM05D007625 ORTHO05D009738 6.0e-84 315.1 255 58.4
Rhsim02G0009500 Rhododendron simsii HOM05D007625 ORTHO05D009738 7.9e-84 314.7 251 61.8
Potri.010G024900 Populus trichocarpa HOM05D007625 ORTHO05D009738 1.0e-83 314.3 246 64.2
BraA05t22123Z Brassica rapa HOM05D007625 ORTHO05D009738 1.3e-83 313.9 274 58.0
Phvul.003G105100 Phaseolus vulgaris HOM05D007625 ORTHO05D009738 1.8e-83 313.5 251 59.4
FvH4_4g17960 Fragaria vesca HOM05D007625 ORTHO05D009738 3.0e-83 312.8 255 58.0
RcHm_v2.0_Chr4g0422131 Rosa chinensis HOM05D007625 ORTHO05D009738 2.5e-82 309.7 255 58.0
Gorai.006G263200 Gossypium raimondii HOM05D007625 ORTHO05D009738 1.6e-81 307.0 244 60.7
C05p49750 Brassica napus HOM05D007625 ORTHO05D009738 2.1e-81 306.6 263 59.7
Os01g0120400 Oryza sativa ssp. japonica HOM05D007625 ORTHO05D009738 3.7e-81 305.8 252 58.7
Lsat_1_v5_gn_5_53001 Lactuca sativa HOM05D007625 ORTHO05D009738 6.2e-81 305.1 244 62.3
BcaNung06438 Brassica carinata HOM05D007625 ORTHO05D009738 1.4e-80 303.9 232 62.9
Eucgr.B01310 Eucalyptus grandis HOM05D007625 ORTHO05D009738 9.0e-80 301.2 239 61.5
TPR.G3171 Trifolium pratense HOM05D007625 ORTHO05D009738 9.0e-80 301.2 257 56.4
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 2.6e-79 299.7 222 62.6
Cc03_g01990 Coffea canephora HOM05D007625 ORTHO05D009738 3.4e-79 299.3 243 61.3
DCAR_027078 Daucus carota HOM05D007625 ORTHO05D009738 3.4e-79 299.3 265 55.1
FAN12G1696 Fragaria x ananassa HOM05D007625 ORTHO05D009738 4.5e-79 298.9 251 57.0
AT3G16565 Arabidopsis thaliana HOM05D007625 ORTHO05D009738 7.6e-79 298.1 286 53.5
Pp3c1_7890 Physcomitrium patens HOM05D007625 ORTHO05D009738 1.3e-78 297.4 252 57.9
Rhsim02G0010500 Rhododendron simsii HOM05D007625 ORTHO05D009738 2.5e-77 293.1 237 61.2
CSS0032939 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 3.2e-77 292.7 269 57.2
Dinv44384 Davidia involucrata HOM05D007625 ORTHO05D005073 3.2e-77 292.7 252 59.1
ECA240G3588 Erigeron canadensis HOM05D007625 ORTHO05D009738 4.2e-77 292.4 250 58.4
FAN17G2144 Fragaria x ananassa HOM05D007625 ORTHO05D009738 7.1e-77 291.6 281 52.0
Hma1.2p1_1567F.1_g291060 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 1.2e-76 290.8 211 67.3
FAN12G4294 Fragaria x ananassa HOM05D007625 ORTHO05D009738 6.0e-76 288.5 241 56.8
HanXRQChr03g0080751 Helianthus annuus HOM05D007625 ORTHO05D009738 2.8e-73 279.6 253 54.2
SMO356G0461 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 1.8e-72 276.9 248 52.8
Hma1.2p1_0078F.1_g040640 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 4.1e-72 275.8 209 64.6
vmacro15237 Vaccinium macrocarpon HOM05D007625 ORTHO05D009738 5.9e-71 271.9 247 57.1
SMO002G0002 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 2.5e-69 266.5 240 52.5
Nn3g21433 Nelumbo nucifera HOM05D007625 ORTHO05D009738 8.7e-67 258.1 252 53.2
CDE12G0709 Ceratophyllum demersum HOM05D007625 ORTHO05D009738 5.3e-64 248.8 256 52.3
AagrBONN_evm.TU.Sc2ySwM_228.2358 Anthoceros agrestis HOM05D007625 ORTHO05D009738 6.9e-64 248.4 183 61.7
Lj3A816T27 Lonicera japonica HOM05D007625 ORTHO05D009738 5.0e-62 242.3 212 59.9
Cpa.g.sc16.167 Carica papaya HOM05D007625 ORTHO05D009738 9.4e-61 238.0 204 58.3
AUR62035873 Chenopodium quinoa HOM05D007625 ORTHO05D009738 1.4e-59 234.2 194 59.3
Carub.0003s1629 Capsella rubella HOM05D007625 ORTHO05D009738 5.7e-58 228.8 179 60.9
Lj3A819G38 Lonicera japonica HOM05D007625 ORTHO05D009738 1.2e-55 221.1 269 48.3
Aa31LG8G3700 Aethionema arabicum HOM05D007625 ORTHO05D009738 1.3e-54 217.6 269 46.5
Glyma.17G026200 Glycine max HOM05D007625 ORTHO05D009738 9.4e-53 211.5 220 51.4
MCO16G322 Micromonas commoda HOM05D007625 ORTHO05D009738 2.0e-50 203.8 261 42.9
Zm00001eb334800 Zea mays HOM05D007625 ORTHO05D009738 1.1e-45 188.0 177 54.2
Sc19g0005180 Simmondsia chinensis HOM05D007625 ORTHO05D009738 5.2e-43 179.1 252 43.7
EL10Ac3g06592 Beta vulgaris HOM05D007625 ORTHO05D009738 1.1e-40 171.4 259 39.4
BcaB03g15776 Brassica carinata HOM05D007625 ORTHO05D009738 2.0e-26 124.0 113 58.4
unitig_0.g621 Utricularia gibba HOM05D007625 ORTHO05D009738 2.9e-22 110.2 139 44.6
Hma1.2p1_0785F.1_g217410 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 4.7e-20 102.8 71 62.0
Medtr4g123440 Medicago truncatula HOM05D007625 ORTHO05D009738 7.5e-18 95.5 124 47.6
Cpa.g.c47082 Carica papaya HOM05D007625 ORTHO05D009738 3.9e-14 83.2 82 53.7
Glyma.19G060100 Glycine max HOM05D007625 ORTHO05D009738 1.1e-13 81.6 83 50.6
Aqoxy2G02999 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 1.6e-12 77.8 67 55.2
CiPaw.05G091200 Carya illinoinensis HOM05D001816 ORTHO05D002001 1.5e-10 71.2 261 26.8
MD16G1169600 Malus domestica HOM05D007625 ORTHO05D009738 2.0e-10 70.9 66 50.0
Eucgr.I01492 Eucalyptus grandis HOM05D001816 ORTHO05D002001 2.6e-10 70.5 260 25.4
AL6G33900 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 5.8e-10 69.3 232 25.4
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 7.5e-10 68.9 234 25.6
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 7.5e-10 68.9 284 24.3
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 9.8e-10 68.6 265 23.8
BcaB05g22693 Brassica carinata HOM05D001816 ORTHO05D002001 1.3e-09 68.2 260 25.4
PGR142G1779 Punica granatum HOM05D001816 ORTHO05D002001 1.3e-09 68.2 231 27.7
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 1.7e-09 67.8 266 25.2
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 2.2e-09 67.4 257 24.1
BcaC03g13917 Brassica carinata HOM05D001816 ORTHO05D002001 2.9e-09 67.0 237 25.7
C02p11280 Brassica napus HOM05D001816 ORTHO05D002001 2.9e-09 67.0 237 25.7
Sabra09G0109800 Salix brachista HOM05D001816 ORTHO05D002001 2.9e-09 67.0 239 26.8
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 3.7e-09 66.6 245 23.7
Thhalv10012575m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 3.7e-09 66.6 237 26.2
Oeu028987.2 Olea europaea HOM05D001816 ORTHO05D002001 3.7e-09 66.6 282 23.4
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 4.9e-09 66.2 265 23.8
BNapus_Darmor_BZH_scaffold_38p00390 Brassica napus HOM05D001816 ORTHO05D002001 4.9e-09 66.2 237 25.3
BolC2t07196H Brassica oleracea HOM05D001816 ORTHO05D002001 6.4e-09 65.9 237 25.3
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 6.4e-09 65.9 251 24.3
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 6.4e-09 65.9 242 27.7
SMO234G0071 Selaginella moellendorffii HOM05D001816 ORTHO05D002001 6.4e-09 65.9 250 25.2
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 8.3e-09 65.5 265 23.8
BraA02t05688Z Brassica rapa HOM05D001816 ORTHO05D002001 8.3e-09 65.5 237 25.3
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 8.3e-09 65.5 248 22.6
Potri.009G141300 Populus trichocarpa HOM05D001816 ORTHO05D002001 8.3e-09 65.5 239 26.4
Carub.0006s2052 Capsella rubella HOM05D001816 ORTHO05D002001 1.1e-08 65.1 234 25.6
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 1.4e-08 64.7 234 25.2
Ah.01g023480 Amaranthus hybridus HOM05D001816 ORTHO05D002001 1.9e-08 64.3 263 27.4
ATR0019G036 Amborella trichopoda HOM05D001816 ORTHO05D002001 1.9e-08 64.3 251 24.3
AT5G22800 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 1.9e-08 64.3 232 25.0
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 1.9e-08 64.3 274 24.1
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 1.9e-08 64.3 251 25.5
Lj9C403T6 Lonicera japonica HOM05D001816 ORTHO05D002001 1.9e-08 64.3 219 26.9
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 1.9e-08 64.3 252 23.8
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 1.9e-08 64.3 283 25.4
Os10g0182000 Oryza sativa ssp. japonica HOM05D001816 ORTHO05D002001 3.2e-08 63.5 251 26.3
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 3.2e-08 63.5 248 25.0
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 4.1e-08 63.2 277 22.0
Sabra05G0078100 Salix brachista HOM05D001816 ORTHO05D002001 4.1e-08 63.2 255 24.3
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 5.4e-08 62.8 233 27.0
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 5.4e-08 62.8 283 22.3
Sp6g22620 Schrenkiella parvula HOM05D001816 ORTHO05D002001 5.4e-08 62.8 261 24.5
Cfa015943 Carpinus fangiana HOM05D001816 ORTHO05D002001 7.0e-08 62.4 252 24.2
Pp3s155_80 Physcomitrium patens HOM05D001816 ORTHO05D034380 7.0e-08 62.4 245 24.5
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 9.2e-08 62.0 252 24.2
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 9.2e-08 62.0 266 25.2
AUR62009961 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.2e-07 61.6 281 26.3
AUR62012953 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.2e-07 61.6 281 26.3
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 1.2e-07 61.6 252 23.8
Pp3c27_7320 Physcomitrium patens HOM05D001816 ORTHO05D002001 1.6e-07 61.2 282 22.7
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 2.0e-07 60.8 251 23.5
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 2.0e-07 60.8 265 21.9
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 2.0e-07 60.8 278 22.7
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 2.0e-07 60.8 270 25.9
Ah.15g091020 Amaranthus hybridus HOM05D001816 ORTHO05D002001 2.7e-07 60.5 271 25.8
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 2.7e-07 60.5 263 25.5
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 2.7e-07 60.5 233 23.2
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 2.7e-07 60.5 266 22.9
CDE05G2317 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 3.5e-07 60.1 257 21.4
Migut.F00930 Erythranthe guttata HOM05D001816 ORTHO05D002001 3.5e-07 60.1 266 23.3
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 3.5e-07 60.1 252 24.2
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 3.5e-07 60.1 267 21.3
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 3.5e-07 60.1 251 24.7
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 3.5e-07 60.1 251 23.9
PRCOL_00002617 Prasinoderma coloniale HOM05D001816 ORTHO05D002001 4.6e-07 59.7 265 26.0
Cc09_g10520 Coffea canephora HOM05D001816 ORTHO05D002001 6.0e-07 59.3 264 26.1
MCO11G803 Micromonas commoda HOM05D001816 ORTHO05D002001 6.0e-07 59.3 221 24.4
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 6.0e-07 59.3 233 22.7
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 6.0e-07 59.3 233 22.7
EL10Ac9g21289 Beta vulgaris HOM05D001816 ORTHO05D002001 7.8e-07 58.9 241 28.2
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 7.8e-07 58.9 239 26.8
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 1.0e-06 58.5 278 22.3
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 1.0e-06 58.5 252 24.2
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.0e-06 58.5 252 24.2
MD16G1000800 Malus domestica HOM05D001816 ORTHO05D002001 1.0e-06 58.5 253 24.5
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.3e-06 58.2 237 22.8
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 1.3e-06 58.2 237 22.8
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 2.3e-06 57.4 252 23.8
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 2.3e-06 57.4 237 23.6
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 2.3e-06 57.4 269 21.9
Lsat_1_v5_gn_7_108581 Lactuca sativa HOM05D001816 ORTHO05D002001 2.3e-06 57.4 265 23.4
Lj8C169G8 Lonicera japonica HOM05D001816 ORTHO05D002001 3.0e-06 57.0 283 21.9
SEGI_12349 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 3.0e-06 57.0 251 21.9
Thecc.02G161500 Theobroma cacao HOM05D001816 ORTHO05D002001 5.0e-06 56.2 269 22.3
GSVIVG01024313001 Vitis vinifera HOM05D001816 ORTHO05D002001 5.0e-06 56.2 142 31.0
THA.LOC104807386 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 6.6e-06 55.8 232 23.7


User provided reference genes

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