Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 2910.9 1495 100.0
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2050.4 1448 72.6
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2031.5 1503 70.0
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2029.2 1503 70.1
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2024.6 1505 70.2
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2022.3 1502 70.2
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2021.1 1503 70.5
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2020.7 1505 69.8
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2017.7 1507 69.5
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2015.0 1502 69.7
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2013.0 1501 70.0
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2013.0 1502 69.8
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2005.7 1502 69.9
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2004.2 1506 69.8
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 1991.9 1535 68.1
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1988.0 1505 69.3
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 1988.0 1500 68.7
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 1974.5 1497 69.1
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 1973.0 1505 68.5
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1971.8 1500 68.8
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1971.1 1499 68.6
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1969.1 1495 68.8
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1968.4 1502 69.3
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 1962.2 1499 67.9
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1960.7 1493 68.5
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 1960.3 1504 68.1
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 1959.5 1499 68.6
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 1958.0 1502 68.5
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1958.0 1502 68.1
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 1956.4 1504 68.3
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 1951.4 1498 68.3
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1947.2 1503 67.5
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1946.0 1493 68.3
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1944.5 1492 68.4
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1938.3 1498 68.5
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 1936.4 1502 67.3
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1931.0 1502 67.5
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 1928.7 1501 67.8
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 1928.7 1542 65.7
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 1925.2 1502 67.3
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1924.8 1501 67.1
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 1924.4 1503 67.3
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 1924.4 1506 66.5
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1924.1 1506 66.4
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1923.7 1506 66.5
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 1923.7 1561 65.2
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 1919.4 1502 66.8
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1915.6 1506 66.3
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1912.1 1501 66.4
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1911.7 1506 66.1
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1909.0 1505 66.8
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1905.2 1505 66.6
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 1898.6 1504 66.7
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 1892.1 1504 65.8
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 1890.5 1504 65.7
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 1889.8 1502 65.9
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 1889.0 1500 66.6
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 1888.6 1503 66.3
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1888.6 1492 66.4
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 1888.6 1576 64.1
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1885.2 1502 65.8
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 1884.0 1501 66.5
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 1881.7 1500 66.2
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1879.8 1485 65.2
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 1879.0 1497 64.9
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 1876.7 1503 66.0
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 1876.3 1507 65.8
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 1872.1 1503 65.7
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1869.7 1499 65.6
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1868.6 1509 65.5
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1867.8 1499 65.6
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1865.1 1503 64.3
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 1864.7 1555 63.9
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1864.4 1489 66.2
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 1862.8 1508 65.3
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1861.7 1509 65.1
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 1858.6 1496 65.4
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 1858.2 1502 64.9
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1853.2 1500 65.3
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1852.8 1509 64.9
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 1852.8 1498 64.9
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1852.4 1510 65.0
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1849.3 1507 65.2
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1847.4 1508 65.0
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 1844.3 1503 64.8
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1844.3 1503 64.4
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1843.9 1511 64.7
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1837.8 1501 64.6
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1819.3 1503 64.0
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1818.1 1497 63.2
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1812.7 1491 64.3
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1793.9 1486 64.2
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1765.0 1585 60.6
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1753.4 1468 63.4
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1738.8 1319 70.0
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1703.0 1446 61.6
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1698.7 1313 68.6
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1687.9 1519 59.1
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1682.9 1316 68.5
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1675.2 1289 68.0
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1662.1 1532 57.9
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1656.7 1379 64.0
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1642.5 1601 58.5
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1611.7 1440 60.3
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1610.5 1317 64.8
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1600.9 1399 62.9
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1555.0 1225 67.3
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1535.8 1451 58.6
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1415.2 991 72.9
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1394.0 1304 57.9
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1337.4 1224 58.6
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1274.6 1433 52.5
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1221.5 1090 62.6
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1161.0 1381 50.1
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1108.2 1383 48.5
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 0.0e+00 1097.8 846 65.4
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.6e-289 999.6 740 71.9
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 2.4e-266 923.3 755 63.2
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 2.2e-264 916.8 1141 49.7
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.8e-234 817.4 580 71.0
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 8.8e-229 798.5 714 61.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 1.0e-224 785.0 786 56.4
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.1e-202 711.8 599 64.3
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 3.5e-193 680.2 934 47.3
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 5.9e-185 652.9 617 56.7
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 7.0e-178 629.4 880 44.2
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 4.1e-170 603.6 368 76.6
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 2.7e-161 574.3 439 71.3
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.9e-151 541.6 748 44.9
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.8e-141 508.4 476 58.4
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 5.8e-140 503.4 483 61.5
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 9.7e-119 433.0 775 38.2
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 5.9e-116 423.7 584 46.9
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 1.7e-102 379.0 1772 25.7
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.3e-99 369.4 445 48.5
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 8.5e-99 366.7 1376 28.6
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.6e-95 355.1 334 57.8
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 1.6e-92 345.9 1592 25.7
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 5.2e-88 330.9 214 76.6
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.2e-79 303.1 225 67.1
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.4e-71 275.0 231 61.0
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 1.7e-67 262.7 195 66.7
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.8e-64 252.7 242 55.0
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 3.7e-62 245.0 274 51.8
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 2.7e-60 238.8 152 74.3
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 1.0e-59 236.9 155 69.7
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 3.2e-45 188.7 186 57.5
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 2.5e-42 179.1 102 82.4
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 4.3e-42 178.3 1341 22.7
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 6.8e-40 171.0 183 52.5
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 1.1e-34 153.7 159 49.7
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 3.6e-33 148.7 218 46.8
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 3.6e-33 148.7 122 59.8
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 5.3e-32 144.8 118 63.6
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.0e-31 142.9 343 32.7
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 5.3e-24 118.2 104 59.6
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 5.3e-24 118.2 100 63.0
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.1e-21 110.5 58 82.8
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 1.4e-21 110.2 97 59.8
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 2.4e-21 109.4 56 87.5
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 1.8e-16 93.2 65 66.2
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.4e-16 92.8 151 40.4
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.1e-13 84.0 70 61.4
SEGI_21189 Sequoiadendron giganteum HOM05D001486 ORTHO05D037216 3.5e-12 79.0 53 73.6
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 6.0e-12 78.2 110 45.5
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 3.7e-09 68.9 54 64.8
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 9.0e-08 64.3 34 79.4
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.0e-07 63.2 53 54.7
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.0e-07 63.2 53 54.7
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 2.0e-07 63.2 134 31.3
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 1.3e-06 60.5 141 30.5


User provided reference genes

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