Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 3.2e-187 659.1 426 100.0
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 7.8e-77 292.4 350 64.9
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.5e-75 288.1 380 56.3
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 1.2e-72 278.5 328 65.2
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 2.2e-71 274.2 345 58.6
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 8.3e-71 272.3 348 64.9
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 1.4e-70 271.6 324 59.3
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 7.0e-70 269.2 353 59.2
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 3.0e-68 263.8 337 60.8
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 8.6e-68 262.3 339 60.8
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 1.9e-67 261.2 351 59.8
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 5.6e-67 259.6 339 60.5
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 7.3e-67 259.2 340 56.8
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 4.7e-66 256.5 406 48.0
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 6.2e-66 256.1 349 55.6
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 4.0e-65 253.4 328 60.1
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 8.9e-65 252.3 344 58.4
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 2.6e-64 250.8 320 60.6
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 7.5e-64 249.2 339 54.0
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 2.2e-63 247.7 327 59.0
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 3.7e-63 246.9 361 51.0
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 3.7e-63 246.9 347 40.3
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 3.7e-63 246.9 323 62.5
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 8.3e-63 245.7 340 55.9
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 1.1e-62 245.4 351 60.1
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 1.9e-62 244.6 343 56.9
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 1.9e-62 244.6 343 52.8
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 2.4e-62 244.2 347 53.6
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 3.2e-62 243.8 327 60.9
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 3.2e-62 243.8 344 53.8
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 4.1e-62 243.4 340 54.7
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 5.4e-62 243.0 340 51.8
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 7.0e-62 242.7 319 61.4
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 7.0e-62 242.7 344 53.8
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 1.6e-61 241.5 343 56.6
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 2.7e-61 240.7 344 60.5
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 3.5e-61 240.4 337 56.4
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 1.3e-60 238.4 327 58.4
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 2.3e-60 237.7 354 44.4
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 3.0e-60 237.3 384 51.0
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 3.0e-60 237.3 383 51.7
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 8.6e-60 235.7 347 57.6
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 2.5e-59 234.2 350 60.0
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 1.2e-58 231.9 350 57.1
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 1.6e-58 231.5 344 60.8
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 2.8e-58 230.7 308 57.8
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 3.6e-58 230.3 325 52.6
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 1.1e-57 228.8 365 45.8
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 6.8e-57 226.1 320 59.4
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 3.7e-55 220.3 334 60.5
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.1e-54 218.8 393 36.6
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 9.2e-54 215.7 287 62.7
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 4.6e-53 213.4 328 57.6
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 2.3e-52 211.1 325 54.8
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 2.5e-51 207.6 397 50.6
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 3.3e-51 207.2 348 52.9
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 4.3e-51 206.8 328 55.8
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 4.3e-51 206.8 280 61.4
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 5.6e-51 206.5 326 56.7
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 5.6e-51 206.5 328 54.6
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 4.7e-50 203.4 324 59.6
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 1.8e-49 201.4 348 54.3
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 1.8e-49 201.4 358 53.6
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 2.4e-49 201.1 327 57.2
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 4.0e-49 200.3 326 50.9
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 5.2e-49 199.9 332 54.5
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 8.9e-49 199.1 351 56.7
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 1.5e-48 198.4 324 54.0
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 2.0e-48 198.0 358 52.0
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 2.6e-48 197.6 350 54.0
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 3.4e-48 197.2 343 55.1
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 3.4e-48 197.2 345 55.1
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 4.4e-48 196.8 351 52.7
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 9.9e-48 195.7 351 56.4
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 9.9e-48 195.7 333 55.9
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 1.3e-47 195.3 324 52.2
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 1.7e-47 194.9 330 55.2
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 2.9e-47 194.1 328 53.4
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 3.8e-47 193.7 330 57.0
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 4.9e-47 193.4 335 55.2
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 8.4e-47 192.6 324 56.8
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 1.1e-46 192.2 328 57.6
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 1.2e-45 188.7 331 56.8
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 1.2e-45 188.7 327 53.5
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 1.6e-45 188.3 326 54.9
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 3.5e-45 187.2 351 52.4
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 7.8e-45 186.0 341 54.5
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 5.1e-44 183.3 357 51.0
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 6.6e-44 183.0 346 52.0
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 6.6e-44 183.0 328 56.7
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 1.1e-43 182.2 336 52.1
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.5e-43 181.8 325 54.5
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 2.5e-43 181.0 404 43.8
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 8.1e-42 176.0 340 49.4
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 1.1e-41 175.6 323 52.6
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.4e-41 175.3 334 33.8
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 1.8e-41 174.9 310 51.0
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 7.6e-40 169.5 350 33.4
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.3e-39 168.7 332 53.0
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 2.7e-37 161.0 366 39.9
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 1.6e-34 151.8 118 62.7
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 1.4e-33 148.7 292 38.7
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 1.8e-33 148.3 407 36.4
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 9.0e-33 146.0 96 68.8
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.5e-32 145.2 96 69.8
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.4e-32 144.1 314 32.8
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 2.1e-29 134.8 255 52.9
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 5.1e-28 130.2 124 53.2
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 5.1e-28 130.2 425 26.4
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.2e-24 119.0 323 33.7
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 6.4e-23 113.2 331 25.7
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.5e-19 101.3 321 39.9
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 4.3e-19 100.5 139 39.6
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 4.3e-19 100.5 66 72.7
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 5.6e-19 100.1 112 45.5
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 5.3e-17 93.6 155 33.5
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 4.9e-15 87.0 141 37.6
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.4e-14 85.5 129 38.8
SEGI_36936 Sequoiadendron giganteum HOM05D005626 ORTHO05D007372 1.6e-13 82.0 70 55.7
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.9e-12 77.4 85 45.9
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 1.9e-11 75.1 99 40.4
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 1.3e-07 62.4 53 54.7
Lj1A1021T50 Lonicera japonica HOM05D005626 ORTHO05D007372 2.9e-07 61.2 68 52.9
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 3.2e-06 57.8 59 47.5
Cfa019813 Carpinus fangiana HOM05D005626 ORTHO05D007372 4.2e-06 57.4 44 59.1
MD07G1293500 Malus domestica HOM05D005626 ORTHO05D007372 5.5e-06 57.0 59 44.1


User provided reference genes

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