Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 2.4e-62 242.3 150 100.0
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 3.0e-52 208.8 141 91.5
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 2.5e-51 205.7 140 86.4
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 3.3e-51 205.3 141 91.5
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 9.6e-51 203.8 141 81.6
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 9.6e-51 203.8 140 87.9
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 1.2e-50 203.4 140 90.0
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 3.6e-50 201.8 140 89.3
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 3.6e-50 201.8 141 83.7
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 8.1e-50 200.7 143 88.1
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 8.1e-50 200.7 140 87.9
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 1.1e-49 200.3 140 90.0
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 1.1e-49 200.3 141 77.3
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 1.4e-49 199.9 144 88.9
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 1.8e-49 199.5 141 85.8
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 2.4e-49 199.1 140 88.6
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 2.4e-49 199.1 140 88.6
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 3.1e-49 198.7 140 80.7
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 4.0e-49 198.4 142 81.0
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 4.0e-49 198.4 141 87.9
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 4.0e-49 198.4 141 84.4
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 5.2e-49 198.0 140 87.1
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 5.2e-49 198.0 140 87.1
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 5.2e-49 198.0 140 87.1
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 9.0e-49 197.2 140 82.9
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 9.0e-49 197.2 140 85.0
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 9.0e-49 197.2 140 85.0
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 9.0e-49 197.2 143 81.1
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.2e-48 196.8 143 78.3
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 1.5e-48 196.4 141 85.8
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 2.0e-48 196.1 140 85.0
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.6e-48 195.7 140 80.0
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.6e-48 195.7 140 85.7
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 2.6e-48 195.7 140 85.7
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 2.6e-48 195.7 143 81.1
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 2.6e-48 195.7 143 81.1
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 3.4e-48 195.3 140 82.1
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 3.4e-48 195.3 148 82.4
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 3.4e-48 195.3 142 86.6
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 3.4e-48 195.3 141 84.4
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 3.4e-48 195.3 140 83.6
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 3.4e-48 195.3 140 75.7
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 4.4e-48 194.9 140 84.3
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 4.4e-48 194.9 150 84.0
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 7.6e-48 194.1 140 85.0
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 7.6e-48 194.1 143 80.4
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 9.9e-48 193.7 142 83.8
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.3e-47 193.4 140 83.6
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 1.3e-47 193.4 140 87.9
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 1.7e-47 193.0 141 85.8
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.7e-47 193.0 140 72.9
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 1.7e-47 193.0 140 75.7
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 1.7e-47 193.0 140 84.3
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 1.7e-47 193.0 140 82.9
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 2.2e-47 192.6 144 81.9
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 2.2e-47 192.6 142 84.5
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 2.9e-47 192.2 143 73.4
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.9e-47 192.2 141 83.7
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 3.8e-47 191.8 145 83.4
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 3.8e-47 191.8 145 75.9
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 3.8e-47 191.8 149 85.9
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 4.9e-47 191.4 148 85.1
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 4.9e-47 191.4 142 83.1
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 4.9e-47 191.4 142 82.4
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 8.4e-47 190.7 143 86.0
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 8.4e-47 190.7 140 82.1
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 1.1e-46 190.3 141 76.6
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 1.1e-46 190.3 143 79.7
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 1.4e-46 189.9 141 83.0
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 1.4e-46 189.9 140 85.0
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 1.9e-46 189.5 140 75.0
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 2.4e-46 189.1 98 87.8
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.4e-46 189.1 98 89.8
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 3.2e-46 188.7 144 81.9
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 3.2e-46 188.7 144 82.6
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 3.2e-46 188.7 98 88.8
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 3.2e-46 188.7 145 83.4
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 3.2e-46 188.7 141 83.7
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 4.2e-46 188.3 140 80.7
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 4.2e-46 188.3 140 80.7
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 4.2e-46 188.3 140 80.7
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 4.2e-46 188.3 141 85.1
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 4.2e-46 188.3 140 87.1
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 5.4e-46 188.0 143 79.0
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 5.4e-46 188.0 98 87.8
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 5.4e-46 188.0 149 79.9
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 7.1e-46 187.6 140 88.6
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 7.1e-46 187.6 140 88.6
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 7.1e-46 187.6 142 78.2
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 7.1e-46 187.6 142 78.2
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 9.3e-46 187.2 140 75.7
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 9.3e-46 187.2 140 70.0
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 9.3e-46 187.2 98 88.8
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 1.2e-45 186.8 140 87.1
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 1.2e-45 186.8 140 85.0
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 1.6e-45 186.4 141 75.9
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 1.6e-45 186.4 142 76.8
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 1.6e-45 186.4 145 82.8
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 1.6e-45 186.4 140 87.1
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 2.1e-45 186.0 146 80.8
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 2.7e-45 185.7 141 70.9
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 2.7e-45 185.7 146 83.6
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 2.7e-45 185.7 144 78.5
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 2.7e-45 185.7 142 86.6
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 2.7e-45 185.7 142 86.6
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 3.5e-45 185.3 140 82.1
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 3.5e-45 185.3 146 85.6
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 3.5e-45 185.3 141 83.7
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 4.6e-45 184.9 145 80.0
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 6.0e-45 184.5 142 76.8
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 6.0e-45 184.5 145 82.1
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 6.0e-45 184.5 144 81.2
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 7.8e-45 184.1 140 79.3
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 7.8e-45 184.1 143 76.9
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 1.3e-44 183.3 140 77.9
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 1.3e-44 183.3 140 77.9
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 3.9e-44 181.8 147 83.0
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 3.9e-44 181.8 145 79.3
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 3.9e-44 181.8 145 79.3
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 3.9e-44 181.8 145 79.3
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 3.9e-44 181.8 145 80.0
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 5.1e-44 181.4 145 78.6
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 6.6e-44 181.0 142 81.7
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 6.6e-44 181.0 147 82.3
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 6.6e-44 181.0 140 77.1
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 6.6e-44 181.0 140 75.0
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 6.6e-44 181.0 98 84.7
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 6.6e-44 181.0 97 86.6
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 8.7e-44 180.6 97 85.6
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 1.1e-43 180.3 140 72.1
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 1.1e-43 180.3 140 72.1
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 1.1e-43 180.3 142 81.0
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 1.5e-43 179.9 140 77.1
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 1.9e-43 179.5 138 78.3
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 3.3e-43 178.7 152 76.3
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 5.6e-43 177.9 140 75.0
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 1.6e-42 176.4 150 80.0
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 8.1e-42 174.1 98 81.6
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 8.1e-42 174.1 90 90.0
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 1.4e-41 173.3 88 92.0
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 3.1e-41 172.2 147 77.6
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 6.9e-41 171.0 143 76.2
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 6.9e-41 171.0 175 68.6
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 9.9e-40 167.2 142 75.4
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 1.4e-38 163.3 83 91.6
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 1.2e-37 160.2 83 88.0
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.6e-37 159.8 143 72.7
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.6e-37 159.8 88 81.8
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 6.0e-37 157.9 80 91.2
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 7.4e-35 151.0 94 68.1
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 3.4e-32 142.1 124 62.1
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 8.4e-31 137.5 137 71.5
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 4.2e-30 135.2 80 75.0
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 1.9e-27 126.3 107 64.5
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 9.6e-27 124.0 60 95.0
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 1.3e-26 123.6 76 68.4
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 6.5e-23 111.3 92 62.0
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 6.0e-21 104.8 94 52.1
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 3.9e-20 102.1 54 87.0
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 1.3e-18 97.1 49 85.7
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 2.8e-18 95.9 107 52.3
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 6.3e-18 94.7 137 51.1
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 1.8e-17 93.2 107 51.4
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 1.5e-11 73.6 45 77.8
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 2.5e-11 72.8 44 79.5
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 2.5e-11 72.8 44 79.5
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 2.2e-10 69.7 44 77.3
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 2.2e-10 69.7 44 77.3
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 2.2e-10 69.7 44 77.3
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 9.1e-09 64.3 43 67.4
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 5.9e-08 61.6 36 77.8
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 8.5e-07 57.8 30 83.3


User provided reference genes

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