Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 4.1e-142 508.1 257 100.0
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 1.7e-76 290.0 240 65.8
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 3.0e-76 289.3 236 66.1
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 5.6e-75 285.0 235 65.5
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 9.5e-75 284.3 253 62.5
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 2.1e-74 283.1 256 62.1
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 2.1e-74 283.1 219 66.2
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.8e-74 282.7 237 64.6
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.8e-74 282.7 237 64.6
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 8.1e-74 281.2 220 66.8
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 8.1e-74 281.2 233 65.2
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 8.1e-74 281.2 205 72.7
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.1e-73 280.8 202 72.3
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.4e-73 280.4 234 65.0
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 1.4e-73 280.4 260 60.0
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 1.8e-73 280.0 187 74.9
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 2.3e-73 279.6 218 67.0
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 2.3e-73 279.6 199 74.4
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 2.3e-73 279.6 237 63.7
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 3.1e-73 279.3 259 61.8
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 3.1e-73 279.3 248 61.7
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 6.8e-73 278.1 233 64.8
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 6.8e-73 278.1 258 62.4
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 8.9e-73 277.7 237 63.7
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 1.5e-72 276.9 241 63.1
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 1.5e-72 276.9 266 61.7
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.0e-72 276.6 252 61.1
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 2.0e-72 276.6 220 68.2
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 2.0e-72 276.6 245 63.3
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 2.6e-72 276.2 204 71.1
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 2.6e-72 276.2 228 63.2
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.4e-72 275.8 250 60.8
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 3.4e-72 275.8 245 62.9
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.4e-72 275.4 228 65.8
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 5.8e-72 275.0 178 77.0
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 5.8e-72 275.0 220 67.7
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 7.6e-72 274.6 255 60.8
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 7.6e-72 274.6 256 60.5
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 7.6e-72 274.6 259 59.5
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 7.6e-72 274.6 255 60.0
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 7.6e-72 274.6 246 63.0
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 7.6e-72 274.6 251 61.8
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 9.9e-72 274.2 228 65.8
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 1.7e-71 273.5 178 77.0
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 2.2e-71 273.1 244 60.2
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.2e-71 273.1 204 71.1
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 2.2e-71 273.1 254 59.1
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 2.2e-71 273.1 184 76.1
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 2.9e-71 272.7 256 60.2
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 2.9e-71 272.7 243 62.6
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.9e-71 272.7 252 60.7
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.9e-71 272.7 228 65.4
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 2.9e-71 272.7 245 61.2
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 3.8e-71 272.3 214 68.7
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 3.8e-71 272.3 178 76.4
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 3.8e-71 272.3 244 62.7
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 3.8e-71 272.3 255 58.0
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 3.8e-71 272.3 253 60.5
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 4.9e-71 271.9 178 75.8
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 4.9e-71 271.9 216 68.5
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 4.9e-71 271.9 246 61.0
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 4.9e-71 271.9 254 59.8
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 4.9e-71 271.9 178 75.8
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 8.4e-71 271.2 227 65.2
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 1.1e-70 270.8 230 64.3
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 1.4e-70 270.4 230 65.2
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 1.4e-70 270.4 254 59.1
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 1.9e-70 270.0 178 75.8
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.9e-70 270.0 205 68.3
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.9e-70 270.0 246 61.4
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.4e-70 269.6 252 60.7
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 3.2e-70 269.2 178 76.4
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 4.1e-70 268.9 232 62.5
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 4.1e-70 268.9 199 70.4
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 4.1e-70 268.9 232 63.8
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 5.4e-70 268.5 232 63.4
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 5.4e-70 268.5 235 61.3
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 5.4e-70 268.5 182 74.2
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 7.1e-70 268.1 196 71.9
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 9.2e-70 267.7 245 63.7
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 1.2e-69 267.3 184 72.8
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 1.2e-69 267.3 213 69.5
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 1.6e-69 266.9 230 64.3
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 1.6e-69 266.9 216 68.1
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.1e-69 266.5 252 59.1
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.1e-69 266.5 247 59.5
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 2.7e-69 266.2 258 58.1
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 2.7e-69 266.2 227 65.2
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 6.0e-69 265.0 178 76.4
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 6.0e-69 265.0 243 62.6
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 6.0e-69 265.0 244 60.2
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.0e-68 262.7 249 59.8
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 5.1e-68 261.9 230 61.7
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 6.6e-68 261.5 218 64.7
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 8.6e-68 261.2 247 61.5
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.5e-67 260.4 262 59.2
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.9e-67 260.0 228 62.3
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 2.5e-67 259.6 218 61.5
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.3e-67 259.2 221 62.4
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 4.3e-67 258.8 227 62.6
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.3e-67 258.8 239 60.7
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 5.6e-67 258.5 192 70.8
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 5.6e-67 258.5 245 58.0
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.6e-66 256.9 187 68.4
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 2.1e-66 256.5 197 66.5
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.6e-66 255.8 220 64.5
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 8.1e-66 254.6 181 68.5
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.1e-65 254.2 243 59.7
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 3.1e-65 252.7 267 53.6
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.5e-64 250.4 257 56.8
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.0e-64 250.0 185 65.4
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 3.4e-64 249.2 249 58.6
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.4e-64 248.8 263 55.5
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.7e-63 246.9 231 58.9
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 2.2e-63 246.5 260 56.5
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.9e-63 246.1 244 57.0
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 4.9e-63 245.4 260 55.8
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 6.4e-63 245.0 244 57.4
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 8.4e-63 244.6 256 55.9
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.1e-62 244.2 231 59.3
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.1e-62 244.2 180 72.2
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 1.4e-62 243.8 244 57.4
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 4.2e-62 242.3 245 58.4
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 4.2e-62 242.3 245 58.4
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 9.3e-62 241.1 169 75.7
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 1.6e-61 240.4 202 63.9
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.5e-61 239.2 217 61.3
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 6.0e-61 238.4 160 73.8
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 7.8e-61 238.0 199 66.8
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.9e-60 235.7 255 52.5
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 1.9e-59 233.4 254 55.9
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 4.3e-59 232.3 221 57.9
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 6.9e-57 224.9 184 63.6
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.2e-53 214.2 153 73.9
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 6.0e-53 211.8 247 52.2
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 2.3e-52 209.9 159 68.6
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 6.2e-50 201.8 187 59.9
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 1.2e-48 197.6 192 56.8
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 1.5e-48 197.2 187 61.5
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 7.1e-46 188.3 209 55.5
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 1.0e-44 184.5 127 71.7
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 4.3e-43 179.1 121 73.6
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.4e-41 174.1 191 55.0
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.4e-41 174.1 119 75.6
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 9.0e-41 171.4 156 62.2
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 7.6e-40 168.3 205 48.3
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 4.9e-39 165.6 177 54.2
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 3.2e-38 162.9 126 68.3
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 1.6e-37 160.6 165 55.2
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 1.5e-35 154.1 177 52.5
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 2.5e-35 153.3 93 79.6
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 4.1e-33 146.0 153 54.9
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 3.8e-31 139.4 166 50.6
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.6e-29 134.0 124 60.5
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.6e-29 132.5 225 42.2
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 4.5e-24 115.9 79 72.2
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 5.0e-23 112.5 78 71.8
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 1.1e-22 111.3 78 71.8
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 1.0e-20 104.8 102 52.9
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.9e-20 102.8 85 62.4
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 7.7e-16 88.6 115 51.3
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 5.0e-15 85.9 83 60.2
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 3.9e-12 76.3 135 37.8
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.7e-10 70.9 134 35.1
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 1.7e-10 70.9 216 31.5
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.1e-09 68.2 48 68.8
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 3.1e-09 66.6 110 36.4
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 4.5e-08 62.8 53 60.4
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.7e-07 60.8 160 28.8
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 6.5e-07 58.9 143 32.9
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.1e-06 58.2 205 30.7
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 1.9e-06 57.4 54 53.7
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 4.2e-06 56.2 63 44.4
Cfa023379 Carpinus fangiana HOM05D003112 ORTHO05D003660 5.5e-06 55.8 123 32.5


User provided reference genes

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