Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 2.6e-49 198.4 96 100.0
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.6e-30 136.0 124 60.5
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 4.4e-25 117.9 125 52.8
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 4.4e-25 117.9 125 53.6
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 7.5e-25 117.1 123 54.5
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 9.8e-25 116.7 125 52.0
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 9.8e-25 116.7 125 52.0
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.3e-24 116.3 122 53.3
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.7e-24 115.9 121 53.7
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 1.7e-24 115.9 121 53.7
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.7e-24 115.9 125 52.0
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 2.2e-24 115.5 122 53.3
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 2.2e-24 115.5 125 52.8
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.2e-24 115.5 125 52.0
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 2.2e-24 115.5 121 54.5
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 2.9e-24 115.2 125 52.0
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.9e-24 115.2 129 50.4
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 2.9e-24 115.2 125 52.0
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 2.9e-24 115.2 125 52.8
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 3.7e-24 114.8 125 52.0
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 3.7e-24 114.8 121 53.7
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.9e-24 114.4 125 52.8
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.9e-24 114.4 125 52.8
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 4.9e-24 114.4 126 54.0
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 6.4e-24 114.0 125 51.2
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 6.4e-24 114.0 121 52.9
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 6.4e-24 114.0 125 51.2
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 6.4e-24 114.0 125 51.2
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 6.4e-24 114.0 134 50.0
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 8.3e-24 113.6 125 51.2
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 8.3e-24 113.6 121 52.9
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 8.3e-24 113.6 125 52.0
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 8.3e-24 113.6 121 52.1
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 8.3e-24 113.6 125 51.2
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 8.3e-24 113.6 125 51.2
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 8.3e-24 113.6 125 51.2
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 8.3e-24 113.6 125 51.2
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 8.3e-24 113.6 125 51.2
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 8.3e-24 113.6 125 51.2
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 8.3e-24 113.6 125 52.0
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 8.3e-24 113.6 125 52.0
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 8.3e-24 113.6 125 52.0
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 8.3e-24 113.6 125 52.0
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.1e-23 113.2 125 52.0
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 1.1e-23 113.2 125 51.2
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 1.1e-23 113.2 125 52.0
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 1.4e-23 112.8 125 50.4
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.4e-23 112.8 125 51.2
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 1.4e-23 112.8 123 52.8
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 1.4e-23 112.8 125 51.2
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 1.9e-23 112.5 125 52.0
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 1.9e-23 112.5 123 52.8
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 1.9e-23 112.5 125 52.0
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 2.4e-23 112.1 125 53.6
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 2.4e-23 112.1 124 51.6
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 2.4e-23 112.1 125 50.4
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.4e-23 112.1 125 51.2
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 3.2e-23 111.7 125 51.2
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 3.2e-23 111.7 125 51.2
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 3.2e-23 111.7 125 51.2
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 3.2e-23 111.7 125 50.4
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 4.1e-23 111.3 125 50.4
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 4.1e-23 111.3 122 51.6
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 4.1e-23 111.3 125 52.0
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 5.4e-23 110.9 125 49.6
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 5.4e-23 110.9 125 49.6
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 5.4e-23 110.9 123 50.4
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 5.4e-23 110.9 122 51.6
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 5.4e-23 110.9 125 51.2
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.2e-22 109.8 125 49.6
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 1.2e-22 109.8 125 50.4
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 1.6e-22 109.4 125 49.6
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.6e-22 109.4 123 50.4
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.1e-22 109.0 123 49.6
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 2.1e-22 109.0 125 50.4
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.1e-22 109.0 122 50.8
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 2.7e-22 108.6 121 52.1
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.7e-22 108.6 123 50.4
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.7e-22 108.6 123 50.4
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 3.5e-22 108.2 123 49.6
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 3.5e-22 108.2 123 49.6
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 3.5e-22 108.2 123 49.6
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 3.5e-22 108.2 123 49.6
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 3.5e-22 108.2 123 49.6
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 3.5e-22 108.2 123 51.2
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 3.5e-22 108.2 125 50.4
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 4.6e-22 107.8 125 50.4
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 6.0e-22 107.5 123 49.6
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 6.0e-22 107.5 124 50.0
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 7.8e-22 107.1 115 53.9
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.0e-21 106.7 123 48.8
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.0e-21 106.7 123 48.8
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 1.0e-21 106.7 123 49.6
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 1.0e-21 106.7 123 49.6
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.0e-21 106.7 125 50.4
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.3e-21 106.3 121 49.6
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 1.3e-21 106.3 125 48.8
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 1.3e-21 106.3 96 59.4
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 1.7e-21 105.9 79 65.8
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 2.3e-21 105.5 123 48.0
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 3.0e-21 105.1 125 46.4
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.0e-21 105.1 125 48.8
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 3.0e-21 105.1 126 50.8
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.9e-21 104.8 125 50.4
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 6.6e-21 104.0 123 48.8
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 1.1e-20 103.2 123 49.6
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.5e-20 102.8 124 47.6
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.5e-20 102.8 81 63.0
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.5e-20 102.8 78 65.4
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.5e-20 102.8 79 64.6
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 1.5e-20 102.8 123 47.2
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.9e-20 102.4 78 64.1
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 1.9e-20 102.4 78 65.4
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.9e-20 102.4 78 64.1
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 1.9e-20 102.4 125 46.4
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 2.5e-20 102.1 125 48.0
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.3e-20 101.7 75 65.3
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.3e-20 101.7 75 65.3
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 3.3e-20 101.7 75 65.3
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.3e-20 101.7 78 64.1
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 4.3e-20 101.3 75 64.0
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 4.3e-20 101.3 125 49.6
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 4.3e-20 101.3 123 46.3
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 5.6e-20 100.9 78 62.8
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 5.6e-20 100.9 123 47.2
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 7.3e-20 100.5 124 45.2
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 7.3e-20 100.5 79 64.6
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.6e-19 99.4 88 61.4
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 2.1e-19 99.0 78 61.5
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 2.8e-19 98.6 78 61.5
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 2.8e-19 98.6 78 61.5
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 2.8e-19 98.6 78 61.5
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 2.8e-19 98.6 78 61.5
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 2.8e-19 98.6 78 61.5
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.8e-19 98.6 123 45.5
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 2.8e-19 98.6 122 45.1
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.7e-19 97.8 121 47.9
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 4.7e-19 97.8 123 47.2
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 8.1e-19 97.1 107 55.1
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.3e-18 95.5 79 63.3
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 4.0e-18 94.7 123 45.5
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 5.2e-18 94.4 121 47.9
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 2.0e-17 92.4 81 60.5
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 7.6e-17 90.5 122 41.8
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 2.9e-16 88.6 106 51.9
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 5.4e-15 84.3 105 47.6
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 2.1e-14 82.4 56 73.2
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 6.0e-14 80.9 50 78.0
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 1.3e-13 79.7 81 55.6
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 7.3e-12 73.9 96 47.9
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 2.8e-11 72.0 123 37.4
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 1.4e-10 69.7 62 56.5
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 1.2e-09 66.6 57 56.1
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.4e-09 64.7 75 46.7
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.4e-09 64.7 48 66.7
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 9.9e-09 63.5 95 43.2
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 9.9e-09 63.5 84 46.4
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.2e-08 62.4 50 64.0
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 7.1e-07 57.4 86 43.0
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 4.6e-06 54.7 34 70.6


User provided reference genes

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