Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G071 Amborella trichopoda HOM05D000001 ORTHO05D017277 7.8e-76 287.0 137 100.0
SalBow3G1695 Salvia bowleyana HOM05D000001 ORTHO05D000003 2.8e-09 65.9 76 36.8
Haze_03597 Corylus avellana HOM05D000001 ORTHO05D000003 1.1e-08 63.9 96 35.4
Cfa010671 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.8e-08 63.2 85 36.5
TAR362G0222 Trochodendron aralioides HOM05D000001 ORTHO05D011479 2.4e-08 62.8 73 42.5
PGSC0003DMG400015186 Solanum tuberosum HOM05D000001 ORTHO05D000003 3.1e-08 62.4 66 39.4
Solyc03g111210.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 7.0e-08 61.2 76 34.2
Sopen03g030350 Solanum pennellii HOM05D000001 ORTHO05D000003 7.0e-08 61.2 76 34.2
Cc01_g15920 Coffea canephora HOM05D000001 ORTHO05D000003 1.2e-07 60.5 85 35.3
SGA_v2.0_scaffold25G10799 Striga asiatica HOM05D000001 ORTHO05D000003 1.2e-07 60.5 69 40.6
BcaC02g11506 Brassica carinata HOM05D000001 ORTHO05D000003 2.0e-07 59.7 73 39.7
A05p11260 Brassica napus HOM05D000001 ORTHO05D000003 2.0e-07 59.7 73 39.7
C04p14590 Brassica napus HOM05D000001 ORTHO05D000003 2.0e-07 59.7 73 39.7
BolC4t23042H Brassica oleracea HOM05D000001 ORTHO05D000003 2.0e-07 59.7 73 39.7
Sabra02G0182400 Salix brachista HOM05D000001 ORTHO05D000003 2.7e-07 59.3 76 35.5
BcaB02g09542 Brassica carinata HOM05D000001 ORTHO05D000003 3.5e-07 58.9 73 39.7
BraA05t20073Z Brassica rapa HOM05D000001 ORTHO05D000003 3.5e-07 58.9 73 39.7
Lsat_1_v5_gn_8_137321 Lactuca sativa HOM05D000001 ORTHO05D000003 3.5e-07 58.9 92 33.7
Actinidia29998 Actinidia chinensis HOM05D000001 ORTHO05D000003 4.5e-07 58.5 85 35.3
CANSAT01G3125 Cannabis sativa HOM05D000001 ORTHO05D000003 4.5e-07 58.5 76 34.2
FvH4_6g22980 Fragaria vesca HOM05D000001 ORTHO05D000003 4.5e-07 58.5 77 42.9
FAN09G0882 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.5e-07 58.5 77 42.9
MD14G1064300 Malus domestica HOM05D000001 ORTHO05D000003 4.5e-07 58.5 77 41.6
Nitab4.5_0000146g0090 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.5e-07 58.5 81 38.3
Nitab4.5_0019709g0010 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.5e-07 58.5 81 38.3
PGR083G0036 Punica granatum HOM05D000001 ORTHO05D000003 4.5e-07 58.5 53 45.3
CAN.G912.4 Capsicum annuum HOM05D000001 ORTHO05D000003 5.9e-07 58.2 81 35.8
Thhalv10015995m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 5.9e-07 58.2 61 42.6
MBI16_g00821_MAGBIO Magnolia biondii HOM05D005782 ORTHO05D007436 5.9e-07 58.2 74 44.6
Nitab4.5_0003005g0060 Nicotiana tabacum HOM05D000001 ORTHO05D000003 5.9e-07 58.2 76 32.9
Peaxi162Scf00089g00051 Petunia axillaris HOM05D000001 ORTHO05D000003 5.9e-07 58.2 66 36.4
RcHm_v2.0_Chr3g0480771 Rosa chinensis HOM05D000001 ORTHO05D000003 5.9e-07 58.2 77 42.9
CARHR223460 Cardamine hirsuta HOM05D000001 ORTHO05D000003 7.7e-07 57.8 79 36.7
FAN05G2618 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.7e-07 57.8 77 42.9
Prupe.7G069900 Prunus persica HOM05D000001 ORTHO05D000003 7.7e-07 57.8 77 41.6
QL11p004771 Quercus lobata HOM05D000001 ORTHO05D000003 7.7e-07 57.8 61 42.6
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 1.0e-06 57.4 64 42.2
FAN02G1511 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.0e-06 57.4 77 42.9
HanXRQChr12g0368281 Helianthus annuus HOM05D000001 ORTHO05D000003 1.0e-06 57.4 62 37.1
Solyc02g011680.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 1.0e-06 57.4 76 38.2
Sopen02g004430 Solanum pennellii HOM05D000001 ORTHO05D000003 1.0e-06 57.4 76 38.2
PGSC0003DMG400017793 Solanum tuberosum HOM05D000001 ORTHO05D000003 1.0e-06 57.4 81 35.8
BcaC06g31653 Brassica carinata HOM05D000001 ORTHO05D000003 1.3e-06 57.0 69 39.1
BcaC06g34593 Brassica carinata HOM05D000001 ORTHO05D000003 1.3e-06 57.0 66 42.4
C07p26750 Brassica napus HOM05D000001 ORTHO05D000003 1.3e-06 57.0 66 42.4
BolC7t43204H Brassica oleracea HOM05D000001 ORTHO05D000003 1.3e-06 57.0 66 42.4
Cfa016878 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.3e-06 57.0 83 39.8
CiPaw.13G152100 Carya illinoinensis HOM05D000001 ORTHO05D000003 1.3e-06 57.0 81 34.6
MELO3C009656.2 Cucumis melo HOM05D000001 ORTHO05D000003 1.3e-06 57.0 80 38.8
MELO3C030264.2 Cucumis melo HOM05D000001 ORTHO05D000003 1.3e-06 57.0 59 40.7
HanXRQChr12g0381171 Helianthus annuus HOM05D000001 ORTHO05D011234 1.3e-06 57.0 71 40.8
Sopen12g026290 Solanum pennellii HOM05D000001 ORTHO05D000003 1.3e-06 57.0 81 37.0
Thecc.05G142300 Theobroma cacao HOM05D000001 ORTHO05D010694 1.3e-06 57.0 57 49.1
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.3e-06 57.0 83 38.6
Nitab4.5_0003680g0090 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.7e-06 56.6 76 32.9
TAR075G0007 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.7e-06 56.6 70 40.0
Aa31LG8G11950 Aethionema arabicum HOM05D000001 ORTHO05D000003 2.3e-06 56.2 64 43.8
BcaB06g28763 Brassica carinata HOM05D000001 ORTHO05D000003 2.3e-06 56.2 73 37.0
Carub.0006s0367 Capsella rubella HOM05D000001 ORTHO05D000003 2.3e-06 56.2 60 40.0
Cfa014452 Carpinus fangiana HOM05D000001 ORTHO05D000003 2.3e-06 56.2 58 48.3
Nitab4.5_0001932g0020 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.3e-06 56.2 76 38.2
RcHm_v2.0_Chr6g0292361 Rosa chinensis HOM05D000001 ORTHO05D000003 2.3e-06 56.2 88 31.8
Sp4g16670 Schrenkiella parvula HOM05D000001 ORTHO05D000003 2.3e-06 56.2 73 38.4
Actinidia33773 Actinidia chinensis HOM05D000001 ORTHO05D010418 2.9e-06 55.8 68 38.2
CAN.G157.11 Capsicum annuum HOM05D023727 ORTHO05D017277 2.9e-06 55.8 66 31.8
CAN.G352.30 Capsicum annuum HOM05D000001 ORTHO05D000003 2.9e-06 55.8 66 34.8
Migut.M00387 Erythranthe guttata HOM05D000001 ORTHO05D000003 2.9e-06 55.8 64 40.6
FvH4_4g07550 Fragaria vesca HOM05D000001 ORTHO05D000003 2.9e-06 55.8 60 41.7
FAN12G0681 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.9e-06 55.8 60 41.7
FAN22G0895 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.9e-06 55.8 60 41.7
Psat7g120720 Pisum sativum HOM05D000001 ORTHO05D000003 2.9e-06 55.8 68 39.7
Prupe.1G079000 Prunus persica HOM05D000001 ORTHO05D000003 2.9e-06 55.8 60 43.3
Rhsim03G0010900 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.9e-06 55.8 83 39.8
TAR633G0165 Trochodendron aralioides HOM05D000001 ORTHO05D009766 2.9e-06 55.8 77 33.8
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 3.8e-06 55.5 58 39.7
AT2G34400 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 3.8e-06 55.5 89 36.0
Carub.0001s3258 Capsella rubella HOM05D000001 ORTHO05D000003 3.8e-06 55.5 104 33.7
FAN03G2736 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.8e-06 55.5 98 29.6
HanXRQChr10g0279461 Helianthus annuus HOM05D000001 ORTHO05D000003 3.8e-06 55.5 67 38.8
MD01G1188300 Malus domestica HOM05D000001 ORTHO05D010370 3.8e-06 55.5 64 43.8
RcHm_v2.0_Chr4g0400141 Rosa chinensis HOM05D000001 ORTHO05D000003 3.8e-06 55.5 60 41.7
SHI19228 Sapria himalayana HOM05D000001 ORTHO05D012572 3.8e-06 55.5 91 37.4
TAR636G1143 Trochodendron aralioides HOM05D000001 ORTHO05D000003 3.8e-06 55.5 78 37.2
AagrBONN_evm.TU.Sc2ySwM_344.3320 Anthoceros agrestis HOM05D000001 ORTHO05D010139 5.0e-06 55.1 76 38.2
AagrBONN_evm.TU.Sc2ySwM_368.2706 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.0e-06 55.1 86 38.4
A06p47470 Brassica napus HOM05D000001 ORTHO05D000003 5.0e-06 55.1 66 40.9
BraA06t27616Z Brassica rapa HOM05D000001 ORTHO05D000003 5.0e-06 55.1 66 40.9
CiPaw.13G167300 Carya illinoinensis HOM05D000001 ORTHO05D010419 5.0e-06 55.1 62 40.3
Ca_00540_v3 Cicer arietinum L. HOM05D000001 ORTHO05D010176 5.0e-06 55.1 65 43.1
Haze_19924 Corylus avellana HOM05D000001 ORTHO05D008194 5.0e-06 55.1 83 39.8
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 5.0e-06 55.1 74 36.5
Glyma.10G047150 Glycine max HOM05D000001 ORTHO05D028695 5.0e-06 55.1 88 31.8
Lalb_Chr10g0091791 Lupinus albus HOM05D000001 ORTHO05D000003 5.0e-06 55.1 76 40.8
MD11G1296500 Malus domestica HOM05D000001 ORTHO05D000003 5.0e-06 55.1 88 33.0
Nitab4.5_0006034g0030 Nicotiana tabacum HOM05D000011 ORTHO05D000018 5.0e-06 55.1 66 37.9
Peaxi162Scf00324g00534 Petunia axillaris HOM05D000001 ORTHO05D000003 5.0e-06 55.1 66 39.4
SalBow4G0269 Salvia bowleyana HOM05D000001 ORTHO05D009574 5.0e-06 55.1 88 31.8
SGA_v2.0_scaffold62G21516 Striga asiatica HOM05D000001 ORTHO05D000003 5.0e-06 55.1 66 40.9
Aa31LG11G8860 Aethionema arabicum HOM05D000001 ORTHO05D000003 6.6e-06 54.7 83 34.9
AagrBONN_evm.TU.Sc2ySwM_228.644 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.6e-06 54.7 62 38.7
AT5G04780 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 6.6e-06 54.7 59 39.0
CANSAT80G0774 Cannabis sativa HOM05D000001 ORTHO05D000003 6.6e-06 54.7 70 38.6
Cfa009843 Carpinus fangiana HOM05D000001 ORTHO05D000003 6.6e-06 54.7 81 35.8
ClCG11G011900 Citrullus lanatus HOM05D000001 ORTHO05D000003 6.6e-06 54.7 61 42.6
Ciclev10010814m.g Citrus clementina HOM05D000001 ORTHO05D000003 6.6e-06 54.7 68 38.2
CsaV3_6G004340 Cucumis sativus L. HOM05D000001 ORTHO05D000003 6.6e-06 54.7 59 39.0
FAN22G0738 Fragaria x ananassa HOM05D000001 ORTHO05D010280 6.6e-06 54.7 91 33.0
Lj2g0019511 Lotus japonicus HOM05D000001 ORTHO05D000003 6.6e-06 54.7 57 42.1
Nn4g26454 Nelumbo nucifera HOM05D000001 ORTHO05D010370 6.6e-06 54.7 71 39.4
Sc19g0001680 Simmondsia chinensis HOM05D000001 ORTHO05D009574 6.6e-06 54.7 87 32.2
TWI74G0840 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 6.6e-06 54.7 91 39.6
Aa31LG2G7360 Aethionema arabicum HOM05D000001 ORTHO05D000003 8.6e-06 54.3 65 38.5
AagrBONN_evm.TU.Sc2ySwM_228.260 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.6e-06 54.3 66 39.4
AL6G14440 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 8.6e-06 54.3 61 39.3
arahy.Tifrunner.gnm1.ann1.36VX8Q Arachis hypogaea HOM05D000001 ORTHO05D021530 8.6e-06 54.3 60 43.3
arahy.Tifrunner.gnm1.ann1.XFY5VA Arachis hypogaea HOM05D000001 ORTHO05D000003 8.6e-06 54.3 60 43.3
A06p37740 Brassica napus HOM05D000001 ORTHO05D000003 8.6e-06 54.3 71 36.6
BraA06t26693Z Brassica rapa HOM05D000001 ORTHO05D000003 8.6e-06 54.3 71 36.6
CAN.G761.25 Capsicum annuum HOM05D000001 ORTHO05D000003 8.6e-06 54.3 83 34.9
ClCG02G009890 Citrullus lanatus HOM05D000001 ORTHO05D000003 8.6e-06 54.3 67 38.8
Ciclev10014627m.g Citrus clementina HOM05D000001 ORTHO05D000003 8.6e-06 54.3 58 37.9
Ciclev10030165m.g Citrus clementina HOM05D000001 ORTHO05D010418 8.6e-06 54.3 62 38.7
Eucgr.B03651 Eucalyptus grandis HOM05D000001 ORTHO05D010419 8.6e-06 54.3 66 36.4
FvH4_7g02270 Fragaria vesca HOM05D000001 ORTHO05D000003 8.6e-06 54.3 98 29.6
FAN06G3884 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.6e-06 54.3 98 29.6
FAN07G2160 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.6e-06 54.3 60 40.0
FAN07G2775 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.6e-06 54.3 84 38.1
Gohir.D08G019900 Gossypium hirsutum HOM05D000001 ORTHO05D000003 8.6e-06 54.3 76 35.5
Lj3P585T23 Lonicera japonica HOM05D000001 ORTHO05D000003 8.6e-06 54.3 76 32.9
Nn7g36118 Nelumbo nucifera HOM05D000001 ORTHO05D000003 8.6e-06 54.3 119 34.5
Peaxi162Scf00285g00229 Petunia axillaris HOM05D000001 ORTHO05D000003 8.6e-06 54.3 77 40.3
Sp7g35040 Schrenkiella parvula HOM05D000001 ORTHO05D000003 8.6e-06 54.3 66 40.9
TPR.G33477 Trifolium pratense HOM05D000001 ORTHO05D009494 8.6e-06 54.3 81 33.3


User provided reference genes

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