Gene: Sopen03g030350

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g030350
  • Transcript Identifier Sopen03g030350.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 66022461-66029887 : negative

Gene Family Information

  • ID HOM05D000001
  • #Genes/#Species 35287/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g030350.1

Descriptions

  • Description Encodes a chloroplast RNA editing factor. | ORGANELLE TRANSCRIPT PROCESSING 80 (OTP80) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:1900865
ISO
PLAZA Integrative Orthologychloroplast RNA modification AT5G59200
GO:0031425
ISO
PLAZA Integrative Orthologychloroplast RNA processing AT5G59200

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0008270
IEA
InterProzinc ion binding
GO:0004017
IEA
InterProadenylate kinase activity
GO:0005524
IEA
InterProATP binding
GO:0016776
IEA
InterProphosphotransferase activity, phosphate group as acceptor
GO:0019205
IEA
InterPronucleobase-containing compound kinase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G59200

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR032867 DYW domain
IPR002885 Pentatricopeptide repeat
IPR006259 Adenylate kinase subfamily
IPR000850 Adenylate kinase/UMP-CMP kinase
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR007862 Adenylate kinase, active site lid domain
Mapman id Description
16.11.3.3.4.47 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (ELI1)
6.1.4.1 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase