Gene: Sopen03g030350
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen03g030350
- Transcript Identifier Sopen03g030350.1
- Gene Type Coding gene
- Location Spenn-ch03 : 66022461-66029887 : negative
Gene Family Information
- ID HOM05D000001
- #Genes/#Species 35287/100
- Phylogenetic origin
- ID ORTHO05D000003
- #Genes/#Species 15137/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen03g030350.1
Descriptions
- Description Encodes a chloroplast RNA editing factor. | ORGANELLE TRANSCRIPT PROCESSING 80 (OTP80) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006139 | IEA | InterPro | nucleobase-containing compound metabolic process | |
| GO:1900865 | ISO | PLAZA Integrative Orthology | chloroplast RNA modification | AT5G59200 |
| GO:0031425 | ISO | PLAZA Integrative Orthology | chloroplast RNA processing | AT5G59200 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0004017 | IEA | InterPro | adenylate kinase activity | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0016776 | IEA | InterPro | phosphotransferase activity, phosphate group as acceptor | |
| GO:0019205 | IEA | InterPro | nucleobase-containing compound kinase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G59200 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR032867 | DYW domain |
| IPR002885 | Pentatricopeptide repeat |
| IPR006259 | Adenylate kinase subfamily |
| IPR000850 | Adenylate kinase/UMP-CMP kinase |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR007862 | Adenylate kinase, active site lid domain |
| Mapman id | Description |
|---|---|
| 16.11.3.3.4.47 | RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (ELI1) |
| 6.1.4.1 | Nucleotide metabolism.purines.phosphotransfers.adenylate kinase |