Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 1.3e-134 483.0 241 100.0
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 5.9e-111 404.4 233 84.1
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 3.6e-108 395.2 241 78.8
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 3.6e-108 395.2 241 77.6
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.0e-107 393.7 241 77.2
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 1.0e-107 393.7 241 77.2
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 6.8e-107 391.0 231 82.3
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.2e-106 390.2 240 76.7
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 2.0e-106 389.4 240 77.1
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 2.0e-106 389.4 241 77.6
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 9.8e-106 387.1 241 77.2
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 1.3e-105 386.7 241 76.8
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 2.9e-105 385.6 230 80.4
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 4.9e-105 384.8 241 77.2
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 6.4e-105 384.4 240 77.5
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 6.4e-105 384.4 236 76.7
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 1.4e-104 383.3 241 76.3
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 1.8e-104 382.9 241 76.3
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.8e-104 382.9 244 75.8
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 3.2e-104 382.1 241 76.8
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 3.2e-104 382.1 240 74.6
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 4.1e-104 381.7 238 76.1
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 1.2e-103 380.2 243 75.7
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 1.6e-103 379.8 241 75.9
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 2.7e-103 379.0 241 76.3
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 7.8e-103 377.5 243 75.3
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 1.0e-102 377.1 241 75.9
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 2.3e-102 375.9 241 76.3
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 3.9e-102 375.2 237 77.2
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 3.9e-102 375.2 241 74.3
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 5.0e-102 374.8 236 76.7
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 5.0e-102 374.8 241 74.3
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 5.0e-102 374.8 241 75.1
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 5.0e-102 374.8 241 74.7
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 6.6e-102 374.4 240 74.6
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 1.1e-101 373.6 241 75.1
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 1.5e-101 373.2 234 76.5
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 1.9e-101 372.9 233 76.4
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 2.5e-101 372.5 240 75.8
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.3e-101 372.1 231 76.6
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 7.3e-101 370.9 238 72.7
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 9.5e-101 370.5 274 67.5
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 9.5e-101 370.5 240 75.0
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 1.2e-100 370.2 241 73.0
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 2.1e-100 369.4 241 73.9
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 2.1e-100 369.4 240 73.3
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 2.8e-100 369.0 231 76.2
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 3.6e-100 368.6 239 72.8
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.6e-100 368.6 231 75.8
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.7e-100 368.2 231 75.3
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.7e-100 368.2 239 72.8
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.7e-100 368.2 239 72.8
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 6.2e-100 367.9 241 73.9
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 6.2e-100 367.9 233 76.0
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.8e-99 366.3 231 75.3
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.3e-99 365.9 225 79.1
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 2.3e-99 365.9 240 72.9
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 4.0e-99 365.2 241 72.2
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 4.0e-99 365.2 239 74.5
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 6.8e-99 364.4 212 82.5
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.2e-98 363.6 233 74.7
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 1.2e-98 363.6 213 81.2
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.4e-98 362.1 236 74.2
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 5.8e-98 361.3 239 71.5
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 9.8e-98 360.5 241 72.2
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.9e-96 356.3 232 73.3
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 3.2e-96 355.5 239 71.5
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 9.2e-96 354.0 239 71.1
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 9.2e-96 354.0 239 71.1
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.6e-95 353.2 232 72.4
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 2.0e-95 352.8 223 76.2
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.7e-95 352.4 239 70.3
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 2.7e-95 352.4 266 66.2
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 3.5e-95 352.1 260 67.7
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 6.0e-95 351.3 233 73.4
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 6.0e-95 351.3 237 71.7
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 1.0e-94 350.5 239 71.1
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.0e-94 350.5 229 72.1
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 1.3e-94 350.1 233 72.5
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 3.9e-94 348.6 239 71.1
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 5.0e-94 348.2 240 69.2
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 1.1e-93 347.1 340 55.6
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 2.5e-93 345.9 229 70.7
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 4.3e-93 345.1 236 70.3
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 4.3e-93 345.1 232 71.1
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 5.6e-93 344.7 208 78.8
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.1e-92 342.8 286 60.8
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 2.8e-92 342.4 239 67.8
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 2.8e-92 342.4 231 69.7
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 4.7e-92 341.7 229 72.5
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 4.7e-92 341.7 211 76.3
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 6.2e-92 341.3 239 66.9
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 5.2e-91 338.2 239 68.6
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 5.8e-90 334.7 232 70.3
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 9.8e-90 334.0 238 68.1
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.3e-89 333.6 232 70.7
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.9e-88 329.7 231 67.5
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.9e-88 329.7 199 78.4
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 3.2e-88 328.9 214 72.0
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 3.5e-87 325.5 202 74.8
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 6.6e-86 321.2 283 58.7
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.5e-85 320.1 201 74.1
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 6.2e-84 314.7 242 63.6
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 6.8e-83 311.2 197 74.6
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 2.2e-81 306.2 189 76.2
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 2.7e-79 299.3 236 63.6
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 3.3e-77 292.4 230 60.4
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 1.1e-75 287.3 168 77.4
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 1.4e-75 287.0 226 61.9
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 8.9e-75 284.3 231 62.3
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 4.2e-72 275.4 171 74.9
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.0e-70 270.8 226 58.0
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.0e-67 258.8 167 70.1
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.4e-64 250.4 149 77.9
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 7.9e-63 244.6 145 77.9
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.5e-58 230.3 141 79.4
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.5e-58 230.3 141 79.4
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 2.4e-56 223.0 194 56.7
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 1.5e-53 213.8 133 74.4
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.0e-51 205.7 127 78.0
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 4.5e-50 202.2 131 72.5
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 2.9e-49 199.5 223 45.7
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 1.4e-48 197.2 121 80.2
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 1.9e-48 196.8 181 57.5
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 2.5e-48 196.4 166 59.6
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 9.3e-48 194.5 125 71.2
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 1.2e-47 194.1 120 80.8
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 3.5e-47 192.6 120 80.0
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 2.1e-44 183.3 225 46.2
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 6.3e-44 181.8 120 72.5
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.3e-37 159.5 129 65.9
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.4e-35 154.1 101 77.2
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 4.5e-34 149.1 121 62.8
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 5.5e-32 142.1 143 51.7
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.7e-31 139.8 121 62.0
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 4.4e-29 132.5 85 69.4
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 4.4e-29 132.5 176 40.9
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 2.2e-28 130.2 81 75.3
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 8.2e-28 128.3 147 42.9
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 6.9e-27 125.2 89 66.3
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 2.9e-25 119.8 233 35.6
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.1e-24 117.9 100 67.0
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.9e-24 117.1 91 59.3
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.7e-23 113.2 106 56.6
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.8e-22 110.5 72 75.0
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 3.7e-20 102.8 192 31.8
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 1.2e-18 97.8 51 84.3
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.6e-18 96.7 66 71.2
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.0e-13 80.5 45 77.8
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 9.1e-11 71.6 163 34.4
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 6.5e-09 65.5 39 74.4
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 6.1e-07 58.9 33 72.7


User provided reference genes

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