Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 1.0e-59 233.0 106 100.0
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 6.1e-44 180.6 88 92.0
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 1.4e-43 179.5 88 92.0
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 1.4e-43 179.5 88 92.0
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 1.4e-43 179.5 88 92.0
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 2.3e-43 178.7 88 92.0
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 3.0e-43 178.3 88 90.9
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 4.0e-43 177.9 88 90.9
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 4.0e-43 177.9 88 90.9
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 6.8e-43 177.2 88 92.0
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 6.8e-43 177.2 88 92.0
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 8.8e-43 176.8 88 90.9
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 8.8e-43 176.8 88 92.0
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 1.5e-42 176.0 88 90.9
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 2.0e-42 175.6 88 90.9
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 2.6e-42 175.3 88 90.9
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 2.6e-42 175.3 88 90.9
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 2.6e-42 175.3 88 90.9
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 3.4e-42 174.9 88 88.6
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 3.4e-42 174.9 88 90.9
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 4.4e-42 174.5 88 90.9
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 4.4e-42 174.5 88 89.8
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 4.4e-42 174.5 88 89.8
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 4.4e-42 174.5 88 89.8
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 5.7e-42 174.1 88 89.8
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 5.7e-42 174.1 88 89.8
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 7.5e-42 173.7 88 88.6
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 7.5e-42 173.7 88 89.8
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 9.8e-42 173.3 88 89.8
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 9.8e-42 173.3 88 89.8
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 9.8e-42 173.3 88 89.8
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 1.7e-41 172.6 88 88.6
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 1.7e-41 172.6 88 88.6
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 1.7e-41 172.6 88 87.5
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 1.7e-41 172.6 88 88.6
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 2.2e-41 172.2 88 88.6
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 2.2e-41 172.2 88 88.6
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 2.8e-41 171.8 88 87.5
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 2.8e-41 171.8 88 88.6
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 3.7e-41 171.4 88 88.6
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 3.7e-41 171.4 88 88.6
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 3.7e-41 171.4 88 88.6
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 3.7e-41 171.4 88 87.5
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 3.7e-41 171.4 88 88.6
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 4.9e-41 171.0 88 88.6
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 6.3e-41 170.6 88 86.4
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 8.3e-41 170.2 88 86.4
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 8.3e-41 170.2 88 86.4
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 1.1e-40 169.9 88 87.5
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.1e-40 169.9 88 86.4
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 1.4e-40 169.5 88 85.2
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 1.4e-40 169.5 88 85.2
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.4e-40 169.5 88 86.4
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 1.8e-40 169.1 88 85.2
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 2.4e-40 168.7 88 87.5
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 2.4e-40 168.7 88 86.4
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 3.1e-40 168.3 88 87.5
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 7.0e-40 167.2 88 86.4
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 7.0e-40 167.2 88 86.4
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 7.0e-40 167.2 88 86.4
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 7.0e-40 167.2 88 86.4
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 7.0e-40 167.2 88 86.4
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 7.0e-40 167.2 88 85.2
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 9.2e-40 166.8 88 84.1
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 9.2e-40 166.8 88 85.2
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 9.2e-40 166.8 88 85.2
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 9.2e-40 166.8 88 85.2
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 9.2e-40 166.8 88 84.1
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 2.0e-39 165.6 88 84.1
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 2.0e-39 165.6 88 84.1
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 2.0e-39 165.6 88 80.7
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 2.7e-39 165.2 88 84.1
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 2.7e-39 165.2 88 84.1
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 2.7e-39 165.2 88 84.1
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 3.5e-39 164.9 88 84.1
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 3.5e-39 164.9 88 83.0
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 4.5e-39 164.5 88 84.1
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 4.5e-39 164.5 88 83.0
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 4.5e-39 164.5 88 83.0
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 7.8e-39 163.7 88 83.0
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.3e-38 162.9 88 81.8
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.3e-38 162.9 88 81.8
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 1.3e-38 162.9 88 81.8
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 1.3e-38 162.9 88 81.8
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 1.3e-38 162.9 88 81.8
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 1.3e-38 162.9 88 81.8
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 3.8e-38 161.4 88 83.0
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 5.0e-38 161.0 88 80.7
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 5.0e-38 161.0 88 80.7
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 5.0e-38 161.0 88 80.7
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 5.0e-38 161.0 88 80.7
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 5.0e-38 161.0 88 80.7
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 5.0e-38 161.0 88 81.8
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 6.6e-38 160.6 88 80.7
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 8.6e-38 160.2 108 73.1
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 5.6e-37 157.5 88 77.3
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 7.3e-37 157.1 88 79.5
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 1.2e-36 156.4 86 79.1
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 1.2e-36 156.4 86 79.1
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.6e-36 156.0 88 80.7
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 2.1e-36 155.6 85 84.7
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 2.1e-36 155.6 85 84.7
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 2.1e-36 155.6 107 71.0
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 4.7e-36 154.5 78 89.7
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 4.7e-36 154.5 78 89.7
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 2.3e-35 152.1 88 79.5
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 4.0e-35 151.4 85 76.5
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 4.0e-35 151.4 85 76.5
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 4.0e-35 151.4 85 76.5
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 6.8e-35 150.6 88 78.4
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 8.9e-35 150.2 85 80.0
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.5e-34 149.4 88 73.9
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 5.7e-34 147.5 78 85.9
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 5.7e-34 147.5 88 73.9
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 7.5e-34 147.1 88 72.7
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 8.3e-33 143.7 78 83.3
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 8.3e-33 143.7 88 70.5
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 1.1e-32 143.3 101 70.3
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.8e-32 142.5 77 84.4
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 3.2e-32 141.7 88 72.7
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 3.2e-32 141.7 86 73.3
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 7.0e-32 140.6 78 79.5
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 7.0e-32 140.6 78 79.5
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 7.0e-32 140.6 86 72.1
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 2.7e-31 138.7 78 78.2
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 3.9e-30 134.8 88 69.3
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 5.0e-30 134.4 88 67.0
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 3.6e-28 128.3 73 78.1
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 3.1e-27 125.2 103 59.2
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 4.9e-25 117.9 85 61.2
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 8.3e-25 117.1 88 65.9
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 3.2e-24 115.2 153 44.4
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 9.2e-24 113.6 84 54.8
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 2.0e-23 112.5 66 80.3
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.0e-23 112.5 88 53.4
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.0e-22 110.2 61 77.0
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 4.3e-21 104.8 54 87.0
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 9.5e-21 103.6 53 88.7
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 9.5e-21 103.6 81 55.6
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 1.2e-20 103.2 63 77.8
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 1.2e-20 103.2 57 86.0
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 2.8e-20 102.1 66 72.7
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 2.8e-20 102.1 54 81.5
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 3.6e-20 101.7 53 83.0
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 6.2e-20 100.9 53 84.9
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 8.1e-20 100.5 53 86.8
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 1.8e-19 99.4 53 81.1
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 2.3e-19 99.0 55 81.8
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 3.1e-19 98.6 97 48.5
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 5.2e-19 97.8 57 78.9
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 1.2e-18 96.7 54 77.8
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 1.5e-18 96.3 54 79.6
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 9.8e-18 93.6 57 77.2
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 1.7e-17 92.8 49 79.6
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 1.7e-17 92.8 53 75.5
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 4.1e-16 88.2 54 75.9
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 7.1e-16 87.4 64 54.7
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 1.2e-15 86.7 85 48.2
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 1.0e-14 83.6 86 46.5
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.7e-09 66.2 36 80.6
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 3.8e-09 65.1 43 67.4
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 1.6e-07 59.7 88 38.6
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 2.1e-07 59.3 89 34.8
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 2.1e-07 59.3 89 34.8


User provided reference genes

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