Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 1.3e-277 959.1 515 100.0
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.2e-185 653.7 430 73.0
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 2.0e-185 652.9 513 73.3
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 8.6e-184 647.5 425 71.3
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 2.5e-183 646.0 422 72.5
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 3.3e-183 645.6 437 71.9
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 1.6e-182 643.3 433 71.8
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.8e-182 642.5 422 72.5
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 1.1e-181 640.6 425 72.2
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 4.4e-180 635.2 423 72.3
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 2.9e-179 632.5 427 71.0
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 4.9e-179 631.7 422 72.0
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 4.9e-179 631.7 425 71.3
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 4.9e-179 631.7 426 71.1
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 4.9e-179 631.7 427 71.0
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 1.4e-178 630.2 523 67.7
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 1.9e-178 629.8 422 71.3
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 2.4e-178 629.4 437 69.6
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 3.2e-178 629.0 435 69.4
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 4.1e-178 628.6 429 71.1
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 4.1e-178 628.6 429 71.1
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 4.1e-178 628.6 438 70.5
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 5.4e-178 628.2 424 70.3
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 5.4e-178 628.2 427 71.2
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 1.2e-177 627.1 424 71.7
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.1e-177 626.3 426 71.6
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 3.5e-177 625.5 427 71.2
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 3.5e-177 625.5 434 69.1
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 6.0e-177 624.8 423 71.2
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 1.0e-176 624.0 517 71.0
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 1.0e-176 624.0 424 70.8
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 1.0e-176 624.0 421 70.8
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 1.3e-176 623.6 440 68.4
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 2.3e-176 622.9 424 70.8
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 6.6e-176 621.3 426 70.9
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 8.6e-176 620.9 427 70.7
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 1.1e-175 620.5 449 68.2
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 1.5e-175 620.2 422 69.9
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 1.5e-175 620.2 424 69.6
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 1.5e-175 620.2 423 70.2
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 2.5e-175 619.4 441 68.5
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 2.5e-175 619.4 442 69.0
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 5.6e-175 618.2 422 69.7
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 7.3e-175 617.8 430 70.2
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 9.5e-175 617.5 425 69.9
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 1.2e-174 617.1 442 68.6
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 2.8e-174 615.9 424 69.8
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 3.6e-174 615.5 523 68.6
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 6.2e-174 614.8 520 68.8
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 6.2e-174 614.8 430 69.3
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 5.2e-173 611.7 440 68.6
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 6.8e-173 611.3 422 70.6
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 6.8e-173 611.3 428 71.5
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 1.2e-172 610.5 428 71.5
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 2.6e-172 609.4 462 66.5
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 3.4e-172 609.0 422 70.6
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 9.9e-172 607.4 430 69.1
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 1.2e-169 600.5 396 72.5
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 1.6e-169 600.1 412 71.1
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 1.6e-169 600.1 427 69.3
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 6.0e-169 598.2 433 69.1
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 1.0e-168 597.4 472 62.9
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 1.3e-168 597.0 430 68.4
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 1.5e-167 593.6 428 66.4
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 5.6e-167 591.7 418 69.6
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.2e-164 583.9 427 66.7
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 1.2e-164 583.9 428 67.1
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 2.0e-164 583.2 438 66.9
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 2.2e-163 579.7 470 62.8
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 2.4e-162 576.2 390 72.3
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 2.1e-161 573.2 425 65.9
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 3.5e-161 572.4 454 63.9
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 3.5e-161 572.4 433 65.6
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 6.0e-161 571.6 431 65.2
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 8.7e-160 567.8 443 65.2
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 1.5e-159 567.0 424 66.0
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.5e-159 567.0 438 64.8
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 1.9e-159 566.6 423 65.0
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 3.3e-159 565.8 422 65.6
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 5.6e-159 565.1 349 75.1
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 7.3e-159 564.7 419 66.8
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 9.6e-159 564.3 422 66.6
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 9.6e-159 564.3 424 65.1
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 2.8e-158 562.8 436 64.7
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.1e-157 560.8 421 65.3
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 1.8e-157 560.1 438 63.7
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 1.8e-157 560.1 427 65.1
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 2.4e-157 559.7 430 65.1
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 1.2e-156 557.4 438 63.5
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 2.1e-153 546.6 437 63.2
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 1.3e-152 543.9 379 69.1
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 3.0e-152 542.7 402 68.4
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 6.6e-152 541.6 424 64.2
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 1.1e-151 540.8 429 63.4
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.8e-150 536.2 390 68.5
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 3.6e-150 535.8 438 62.1
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 4.8e-150 535.4 425 63.5
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 1.4e-149 533.9 392 66.6
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.8e-149 533.5 421 63.7
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 3.0e-144 516.2 401 65.8
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 5.1e-144 515.4 390 64.4
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 3.4e-140 502.7 389 66.1
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 2.2e-139 500.0 422 59.7
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 2.9e-139 499.6 339 69.6
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 8.4e-139 498.0 433 58.0
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 1.4e-138 497.3 314 73.9
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 2.5e-138 496.5 434 70.3
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 8.4e-131 471.5 464 56.0
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 6.7e-128 461.8 327 69.1
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 1.4e-125 454.1 456 51.5
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 5.3e-125 452.2 453 51.4
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 2.9e-123 446.4 374 59.9
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 3.9e-120 436.0 360 64.4
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 2.0e-119 433.7 292 70.9
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 5.7e-111 405.6 434 52.1
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 7.4e-111 405.2 326 56.7
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 1.7e-110 404.1 311 65.0
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 1.0e-104 384.8 331 60.1
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 4.7e-97 359.4 330 55.8
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 4.8e-94 349.4 436 46.6
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 2.4e-93 347.1 218 72.5
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 2.7e-84 317.0 190 74.2
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 3.2e-77 293.5 259 57.1
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 2.6e-71 273.9 230 60.4
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 2.0e-47 194.5 257 59.5
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 2.6e-47 194.1 276 44.9
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 1.3e-43 181.8 114 73.7
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 4.0e-40 170.2 111 71.2
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 2.7e-36 157.5 308 35.1
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 7.6e-31 139.4 143 55.9
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 1.7e-30 138.3 77 81.8
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 1.3e-27 128.6 272 33.8
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 1.5e-23 115.2 322 28.3
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 5.5e-21 106.7 70 70.0
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 7.1e-21 106.3 105 59.0
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 6.3e-17 93.2 80 58.8
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 1.0e-14 85.9 52 73.1
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.0e-07 61.6 29 82.8


User provided reference genes

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