Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 0.0e+00 1788.5 919 100.0
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 2.6e-239 832.8 924 52.2
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 2.2e-238 829.7 929 52.2
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 2.7e-236 822.8 891 53.2
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 2.1e-233 813.1 894 52.3
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 3.2e-229 799.3 897 50.5
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 3.2e-229 799.3 917 51.8
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 7.0e-229 798.1 883 52.2
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 9.2e-229 797.7 930 50.9
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 3.5e-228 795.8 897 52.0
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 1.3e-227 793.9 930 50.6
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 1.7e-227 793.5 885 51.6
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 2.3e-227 793.1 886 51.6
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 1.5e-226 790.4 914 51.0
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 3.3e-226 789.3 938 50.1
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 1.2e-225 787.3 891 51.3
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 1.1e-224 784.3 902 50.8
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 6.8e-224 781.6 909 50.3
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 6.8e-224 781.6 900 50.2
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 8.9e-224 781.2 949 49.8
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 2.0e-223 780.0 927 49.4
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 2.0e-223 780.0 902 49.8
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 2.2e-222 776.5 895 50.4
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 4.9e-222 775.4 989 48.0
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 4.1e-221 772.3 890 50.1
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 2.0e-220 770.0 891 50.3
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 5.0e-219 765.4 894 50.6
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 3.3e-218 762.7 935 49.0
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 7.3e-218 761.5 923 48.8
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 1.2e-217 760.8 901 49.8
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 1.1e-216 757.7 919 49.8
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 1.8e-216 756.9 881 50.2
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 1.8e-216 756.9 896 50.1
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 3.4e-215 752.7 887 49.5
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 5.8e-215 751.9 897 49.4
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 2.2e-214 750.0 933 48.6
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 1.1e-213 747.7 889 48.7
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 7.8e-212 741.5 906 48.8
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 1.3e-211 740.7 892 49.1
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 1.7e-211 740.3 886 48.9
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 1.7e-211 740.3 902 48.6
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 4.3e-210 735.7 900 48.0
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 9.5e-210 734.6 922 47.2
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 2.8e-209 733.0 886 48.8
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 8.1e-209 731.5 881 49.9
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 2.6e-207 726.5 944 46.6
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 4.4e-207 725.7 879 48.2
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 9.9e-207 724.5 897 48.2
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 1.3e-206 724.2 954 46.0
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 2.2e-206 723.4 912 48.0
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 2.9e-206 723.0 893 49.0
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 1.1e-205 721.1 908 47.7
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.1e-205 721.1 902 48.0
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.1e-205 721.1 954 45.5
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 3.2e-205 719.5 968 45.7
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 9.2e-205 718.0 882 49.8
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 1.2e-204 717.6 890 49.6
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 1.2e-204 717.6 955 45.7
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 3.5e-204 716.1 908 47.9
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 3.9e-203 712.6 863 49.1
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 1.1e-202 711.1 934 47.6
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 2.5e-202 709.9 883 47.7
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 9.6e-202 708.0 914 47.9
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 9.0e-200 701.4 768 52.6
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 1.5e-199 700.7 902 47.6
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 2.0e-199 700.3 920 46.5
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 9.9e-199 698.0 936 46.6
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 1.7e-198 697.2 906 46.1
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 7.1e-197 691.8 901 45.2
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 2.1e-196 690.3 893 47.5
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 6.0e-196 688.7 929 44.6
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 3.3e-194 682.9 881 45.6
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 4.3e-194 682.6 783 50.4
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 1.6e-193 680.6 931 45.3
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 5.8e-191 672.2 878 45.7
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 3.8e-190 669.5 901 46.3
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 4.9e-190 669.1 907 44.9
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 2.4e-189 666.8 901 45.3
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 1.0e-187 661.4 940 43.9
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 1.3e-187 661.0 926 44.4
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 1.8e-187 660.6 870 45.2
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 1.9e-186 657.1 747 51.4
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 9.6e-186 654.8 626 58.0
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 2.1e-185 653.7 866 44.8
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 2.1e-185 653.7 897 45.3
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 9.0e-184 648.3 870 45.4
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 1.5e-183 647.5 921 43.0
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 2.0e-183 647.1 949 43.2
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 9.9e-183 644.8 920 43.9
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 1.7e-182 644.0 896 43.5
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 4.9e-182 642.5 896 43.5
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 3.0e-179 633.3 774 50.0
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 4.0e-176 622.9 714 50.3
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 1.0e-174 618.2 885 42.4
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 3.8e-174 616.3 936 41.9
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 3.8e-174 616.3 878 44.3
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 2.5e-170 603.6 891 45.1
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 2.9e-158 563.5 880 40.7
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 8.5e-158 562.0 758 45.4
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 6.1e-156 555.8 971 37.4
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 1.0e-155 555.1 891 40.5
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 1.4e-155 554.7 610 50.3
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 2.2e-153 547.4 748 46.3
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 5.9e-151 539.3 971 38.9
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 3.3e-146 523.5 808 41.3
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 9.4e-141 505.4 634 48.3
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 5.8e-114 416.4 1104 30.1
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 3.9e-110 403.7 496 47.0
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 8.4e-81 306.2 360 46.7
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 1.9e-56 225.3 871 26.4
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 7.1e-56 223.4 252 50.4
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 5.3e-43 180.6 320 33.4
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 3.6e-39 167.9 253 38.7
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 4.1e-35 154.5 174 50.6
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 2.6e-29 135.2 137 51.8
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 8.2e-28 130.2 312 32.1
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 3.1e-27 128.3 258 29.5
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 9.4e-16 90.1 186 28.0
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 2.1e-15 89.0 116 46.6
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 3.0e-14 85.1 85 55.3
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 4.4e-13 81.3 80 52.5
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 1.5e-08 66.2 109 45.9


User provided reference genes

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