Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 3.7e-252 874.4 445 100.0
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 1.1e-174 617.1 454 71.4
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 5.9e-173 611.3 454 71.8
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 8.5e-172 607.4 454 72.2
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 1.9e-171 606.3 455 70.5
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 2.7e-170 602.4 453 71.5
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 5.2e-169 598.2 456 69.1
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 6.7e-169 597.8 453 70.0
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 2.0e-168 596.3 454 70.0
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 9.7e-168 594.0 449 70.6
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 2.8e-167 592.4 452 70.8
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 2.8e-167 592.4 457 69.1
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 3.7e-167 592.0 458 69.9
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 6.3e-167 591.3 466 68.5
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 4.1e-166 588.6 458 69.4
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.2e-165 587.0 455 70.5
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 2.2e-164 582.8 453 67.8
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 2.2e-164 582.8 455 69.7
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 2.9e-164 582.4 453 69.3
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 1.5e-163 580.1 452 68.1
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 2.5e-163 579.3 454 69.8
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 4.2e-163 578.6 453 69.1
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 5.5e-163 578.2 456 67.3
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 5.5e-163 578.2 454 68.7
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 1.2e-162 577.0 454 69.6
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 1.2e-162 577.0 463 67.6
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 3.6e-162 575.5 452 67.5
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 4.7e-162 575.1 463 68.7
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 1.0e-161 573.9 491 64.0
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 4.0e-161 572.0 456 67.5
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 5.2e-161 571.6 456 68.0
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 6.8e-161 571.2 444 67.3
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 6.8e-161 571.2 452 66.4
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 8.8e-161 570.9 456 66.7
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.7e-159 566.6 456 66.2
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 2.8e-159 565.8 452 66.8
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 3.7e-159 565.5 448 67.6
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 1.1e-158 563.9 450 67.1
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 1.1e-158 563.9 449 65.9
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 1.2e-157 560.5 452 67.5
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 1.2e-157 560.5 448 67.0
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 1.6e-157 560.1 452 67.5
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 2.0e-157 559.7 449 68.2
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 7.7e-157 557.8 445 67.0
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 1.0e-156 557.4 450 66.2
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 2.3e-156 556.2 450 66.7
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 3.8e-156 555.4 447 66.0
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 5.0e-156 555.1 457 67.4
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 6.6e-156 554.7 454 67.0
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 8.6e-156 554.3 444 66.7
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 1.5e-155 553.5 453 66.0
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.9e-155 553.1 445 66.1
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 9.5e-155 550.8 421 69.6
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 9.5e-155 550.8 450 65.8
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 9.5e-155 550.8 449 66.4
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.2e-154 550.4 444 67.1
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 2.1e-154 549.7 450 65.1
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 3.6e-154 548.9 451 66.5
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 6.1e-154 548.1 450 66.7
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 1.0e-153 547.4 450 66.0
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 4.0e-153 545.4 460 65.0
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 5.2e-153 545.0 414 70.3
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 1.5e-152 543.5 453 65.1
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 1.5e-152 543.5 454 65.6
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 2.0e-152 543.1 424 67.9
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 5.7e-152 541.6 469 64.0
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 7.5e-152 541.2 445 65.2
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 2.8e-151 539.3 472 62.1
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 1.4e-150 537.0 453 64.7
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.8e-150 536.6 458 63.8
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.1e-150 535.8 460 63.3
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 3.1e-150 535.8 442 64.9
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 9.2e-150 534.3 445 65.2
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 2.0e-149 533.1 451 64.1
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 2.7e-149 532.7 450 68.4
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 3.5e-149 532.3 468 63.0
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 4.5e-149 531.9 452 63.7
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 7.8e-149 531.2 446 65.2
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 1.0e-148 530.8 459 64.7
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 5.0e-148 528.5 444 65.1
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 1.5e-147 526.9 444 64.9
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 7.3e-147 524.6 455 64.2
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 6.1e-146 521.5 452 63.5
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 6.1e-146 521.5 455 63.3
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 8.0e-146 521.2 414 67.4
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 2.3e-145 519.6 454 63.0
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 3.1e-145 519.2 396 68.7
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 5.2e-145 518.5 457 64.3
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 5.2e-145 518.5 447 63.8
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 1.5e-144 516.9 453 62.3
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 1.7e-143 513.5 505 57.6
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 6.4e-143 511.5 449 63.0
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 1.1e-142 510.8 430 64.2
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 1.9e-142 510.0 450 61.6
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 2.4e-142 509.6 450 61.6
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 9.2e-142 507.7 450 61.3
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 6.0e-141 505.0 453 62.0
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 1.0e-140 504.2 450 60.4
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 1.7e-140 503.4 453 61.6
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 5.0e-140 501.9 453 61.6
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 1.2e-138 497.3 453 60.9
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 1.1e-137 494.2 456 61.0
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 1.1e-137 494.2 480 57.5
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 3.1e-137 492.7 453 60.3
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 8.9e-137 491.1 457 59.3
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 1.2e-136 490.7 453 60.0
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 2.6e-136 489.6 478 56.9
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 3.7e-135 485.7 457 60.6
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 1.4e-134 483.8 457 60.2
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.4e-134 483.0 451 61.4
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 4.1e-134 482.3 459 59.9
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 7.0e-134 481.5 446 61.2
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 2.3e-132 476.5 479 56.8
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 5.6e-131 471.9 431 61.7
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 3.4e-128 462.6 504 51.6
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 1.3e-127 460.7 366 65.3
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 3.7e-127 459.1 498 51.4
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 3.2e-126 456.1 419 59.7
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 1.7e-124 450.3 410 61.0
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 4.3e-123 445.7 372 65.6
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 1.2e-120 437.6 406 59.1
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 8.4e-119 431.4 393 59.8
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.1e-118 431.0 507 51.5
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 5.1e-116 422.2 422 58.5
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 2.9e-111 406.4 480 52.7
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 1.9e-110 403.7 445 51.0
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 4.6e-109 399.1 332 61.4
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 4.8e-106 389.0 453 52.3
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.3e-103 380.9 336 62.2
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 4.0e-89 332.8 241 66.8
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 1.0e-87 328.2 458 47.4
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 1.8e-84 317.4 363 50.7
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 8.7e-84 315.1 555 38.7
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 3.7e-82 309.7 333 55.0
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.5e-80 304.3 394 46.2
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 2.1e-77 293.9 522 37.4
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 3.1e-73 280.0 488 41.0
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 6.7e-68 262.3 369 44.7
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 1.3e-58 231.5 383 38.6
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 3.5e-56 223.4 382 40.6
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 3.2e-54 216.9 174 63.2
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 1.0e-52 211.8 131 75.6
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 3.4e-51 206.8 178 59.6
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 2.8e-50 203.8 179 59.8
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 3.5e-48 196.8 253 48.6
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 1.3e-47 194.9 172 58.1
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 9.4e-46 188.7 255 52.5
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 6.8e-44 182.6 263 41.4
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.5e-35 154.8 212 44.8
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 2.9e-34 150.6 362 32.0
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 7.0e-33 146.0 106 66.0
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 6.6e-31 139.4 141 50.4
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 1.3e-26 125.2 134 59.7
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 5.0e-23 113.2 115 52.2
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 4.7e-21 106.7 172 40.7
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 3.1e-20 104.0 134 56.0
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 6.8e-20 102.8 156 48.1
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 2.6e-19 100.9 136 51.5
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.9e-17 94.7 85 63.5
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 2.4e-17 94.4 56 75.0
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 5.4e-17 93.2 99 49.5
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 2.1e-16 91.3 299 25.1
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 2.3e-12 77.8 53 69.8
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 3.4e-11 73.9 166 41.0
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 1.9e-09 68.2 200 30.5
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 4.1e-09 67.0 121 47.1
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 4.1e-09 67.0 109 38.5
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 3.0e-07 60.8 44 72.7
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.1e-06 58.9 30 93.3
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 4.3e-06 57.0 38 81.6
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 4.3e-06 57.0 36 77.8


User provided reference genes

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