Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0326G040 Amborella trichopoda HOM05D001816 ORTHO05D002001 3.9e-48 194.5 100 100.0
ATR0019G036 Amborella trichopoda HOM05D001816 ORTHO05D002001 7.3e-39 163.7 99 87.9
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 9.2e-34 146.7 99 72.7
TAR629G2582 Trochodendron aralioides HOM05D001816 ORTHO05D002001 2.3e-32 142.1 99 71.7
MSTRG.3 Avicennia marina HOM05D001816 ORTHO05D002001 3.3e-31 138.3 99 66.7
COL.COLO4_03690 Corchorus olitorius HOM05D001816 ORTHO05D002001 7.3e-31 137.1 99 69.7
Thecc.02G161500 Theobroma cacao HOM05D001816 ORTHO05D002001 7.3e-31 137.1 99 69.7
Lj8C169G8 Lonicera japonica HOM05D001816 ORTHO05D002001 2.1e-30 135.6 99 65.7
Dinv29120 Davidia involucrata HOM05D001816 ORTHO05D002001 2.8e-30 135.2 99 65.7
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 3.6e-30 134.8 99 67.7
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 3.6e-30 134.8 99 67.7
Duzib248G0227 Durio zibethinus HOM05D001816 ORTHO05D002001 1.1e-29 133.3 99 68.7
Lsat_1_v5_gn_7_108581 Lactuca sativa HOM05D001816 ORTHO05D002001 1.1e-29 133.3 99 64.6
QL03p043876 Quercus lobata HOM05D001816 ORTHO05D002001 1.1e-29 133.3 99 65.7
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 1.4e-29 132.9 99 65.7
HanXRQChr11g0337711 Helianthus annuus HOM05D001816 ORTHO05D002001 1.8e-29 132.5 99 64.6
Prupe.1G345900 Prunus persica HOM05D001816 ORTHO05D002001 1.8e-29 132.5 99 68.7
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 2.4e-29 132.1 99 65.7
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 2.4e-29 132.1 99 66.7
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 3.1e-29 131.7 99 65.7
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 4.0e-29 131.3 99 62.6
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 4.0e-29 131.3 99 66.7
Peaxi162Scf00516g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 4.0e-29 131.3 99 64.6
TWI77G0632 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 4.0e-29 131.3 99 65.7
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 5.3e-29 131.0 99 66.7
MD16G1000800 Malus domestica HOM05D001816 ORTHO05D002001 5.3e-29 131.0 99 66.7
Sabra05G0078100 Salix brachista HOM05D001816 ORTHO05D002001 6.9e-29 130.6 99 66.7
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 6.9e-29 130.6 99 62.6
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 6.9e-29 130.6 99 65.7
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 9.0e-29 130.2 99 65.7
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 9.0e-29 130.2 99 65.7
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 9.0e-29 130.2 99 65.7
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 9.0e-29 130.2 99 65.7
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 1.2e-28 129.8 99 64.6
Nitab4.5_0009278g0020 Nicotiana tabacum HOM05D001816 ORTHO05D002001 1.2e-28 129.8 99 64.6
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 1.2e-28 129.8 99 67.7
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 1.2e-28 129.8 99 65.7
Eucgr.J00856 Eucalyptus grandis HOM05D001816 ORTHO05D002001 1.5e-28 129.4 99 65.7
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 1.5e-28 129.4 99 67.7
Cfa015943 Carpinus fangiana HOM05D001816 ORTHO05D002001 2.0e-28 129.0 99 63.6
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 2.0e-28 129.0 99 65.7
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 2.0e-28 129.0 99 63.6
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 2.6e-28 128.6 99 64.6
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 3.4e-28 128.3 99 62.6
FAN17G1219 Fragaria x ananassa HOM05D001816 ORTHO05D002001 3.4e-28 128.3 99 62.6
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 3.4e-28 128.3 99 60.6
HPP92_007958 Vanilla planifolia HOM05D001816 ORTHO05D002001 3.4e-28 128.3 99 60.6
Aa31LG10G3980 Aethionema arabicum HOM05D001816 ORTHO05D002001 4.4e-28 127.9 99 65.7
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 4.4e-28 127.9 99 63.6
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 5.8e-28 127.5 99 64.6
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 5.8e-28 127.5 99 63.6
CAN.G732.34 Capsicum annuum HOM05D001816 ORTHO05D002001 7.6e-28 127.1 99 61.6
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 9.9e-28 126.7 99 62.6
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 9.9e-28 126.7 99 63.6
Migut.F00930 Erythranthe guttata HOM05D001816 ORTHO05D002001 1.3e-27 126.3 99 58.6
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 1.3e-27 126.3 99 61.6
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.3e-27 126.3 99 61.6
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 1.3e-27 126.3 99 62.6
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 1.3e-27 126.3 99 62.6
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 1.7e-27 125.9 99 62.6
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 2.2e-27 125.6 99 61.6
Actinidia27035 Actinidia chinensis HOM05D001816 ORTHO05D002001 2.2e-27 125.6 99 61.6
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 2.2e-27 125.6 99 61.6
TWI74G1422 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 2.9e-27 125.2 99 61.6
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 3.8e-27 124.8 99 61.6
A06p03300 Brassica napus HOM05D001816 ORTHO05D002001 3.8e-27 124.8 99 61.6
BolC6t35631H Brassica oleracea HOM05D001816 ORTHO05D002001 3.8e-27 124.8 99 61.6
BraA06t23540Z Brassica rapa HOM05D001816 ORTHO05D002001 3.8e-27 124.8 99 61.6
Duzib052G1218 Durio zibethinus HOM05D001816 ORTHO05D002001 3.8e-27 124.8 86 70.9
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 6.4e-27 124.0 99 61.6
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 6.4e-27 124.0 99 62.6
C06p05260 Brassica napus HOM05D001816 ORTHO05D002001 8.4e-27 123.6 99 60.6
BolC6t35636H Brassica oleracea HOM05D001816 ORTHO05D002001 8.4e-27 123.6 99 60.6
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 1.1e-26 123.2 99 59.6
Aqoxy7G03361 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 1.1e-26 123.2 99 60.6
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 1.1e-26 123.2 99 63.6
CDE05G2317 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 1.1e-26 123.2 99 64.6
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.9e-26 122.5 99 59.6
unitig_62.g23836 Utricularia gibba HOM05D001816 ORTHO05D002001 1.9e-26 122.5 99 61.6
AUR62015043 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.4e-26 122.1 99 59.6
Gohir.D12G138166 Gossypium hirsutum HOM05D001816 ORTHO05D002001 2.4e-26 122.1 93 67.7
PSO063G5047 Papaver somniferum HOM05D001816 ORTHO05D002001 2.4e-26 122.1 99 61.6
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 3.2e-26 121.7 99 59.6
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 4.2e-26 121.3 99 57.6
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 4.2e-26 121.3 99 59.6
PSO111G0090 Papaver somniferum HOM05D001816 ORTHO05D002001 7.1e-26 120.6 99 60.6
Sc06g0002420 Simmondsia chinensis HOM05D001816 ORTHO05D002001 7.1e-26 120.6 100 60.0
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 9.3e-26 120.2 99 58.6
Cc11_g00060 Coffea canephora HOM05D001816 ORTHO05D002001 9.3e-26 120.2 99 58.6
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 9.3e-26 120.2 99 57.6
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.2e-25 119.8 99 59.6
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 1.2e-25 119.8 99 58.6
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 1.2e-25 119.8 99 57.6
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 1.2e-25 119.8 106 58.5
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 1.6e-25 119.4 99 55.6
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 2.1e-25 119.0 99 56.6
Atru.chr9.1432 Acer truncatum HOM05D001816 ORTHO05D002001 2.7e-25 118.6 99 58.6
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 2.7e-25 118.6 99 63.6
PSO782G0984 Papaver somniferum HOM05D001816 ORTHO05D002001 3.5e-25 118.2 99 59.6
Ah.15g091020 Amaranthus hybridus HOM05D001816 ORTHO05D002001 4.6e-25 117.9 99 57.6
Glyma.11G102100 Glycine max HOM05D001816 ORTHO05D002001 4.6e-25 117.9 99 55.6
SGA_v2.0_scaffold59G20731 Striga asiatica HOM05D001816 ORTHO05D002001 4.6e-25 117.9 122 50.8
Phvul.011G031100 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 7.8e-25 117.1 99 55.6
VMungo1127G1305 Vigna mungo HOM05D001816 ORTHO05D002001 7.8e-25 117.1 99 55.6
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 1.0e-24 116.7 99 54.5
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 1.0e-24 116.7 97 58.8
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 1.3e-24 116.3 122 51.6
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 3.0e-24 115.2 99 58.6
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 3.0e-24 115.2 103 59.2
BolC3t21267H Brassica oleracea HOM05D001816 ORTHO05D002001 3.0e-24 115.2 103 59.2
TPR.G32335 Trifolium pratense HOM05D001816 ORTHO05D002001 3.0e-24 115.2 99 55.6
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 5.1e-24 114.4 99 58.6
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 6.6e-24 114.0 99 52.5
Oeu028987.2 Olea europaea HOM05D001816 ORTHO05D002001 6.6e-24 114.0 94 54.3
Hund19354 Selenicereus undatus HOM05D001816 ORTHO05D002001 6.6e-24 114.0 134 47.0
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 8.7e-24 113.6 99 52.5
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 1.1e-23 113.2 99 56.6
C06p05090 Brassica napus HOM05D001816 ORTHO05D002001 1.5e-23 112.8 95 58.9
SEGI_04403 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 1.9e-23 112.5 99 56.6
MELO3C027271.2 Cucumis melo HOM05D001816 ORTHO05D026252 1.3e-22 109.8 93 57.0
SEGI_12349 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 2.1e-22 109.0 100 58.0
Gohir.A12G134600 Gossypium hirsutum HOM05D001816 ORTHO05D002001 2.8e-22 108.6 95 61.1
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 1.4e-21 106.3 99 53.5
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 2.4e-21 105.5 97 54.6
Lalb_Chr03g0024831 Lupinus albus HOM05D001816 ORTHO05D002001 3.1e-21 105.1 99 52.5
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 3.1e-21 105.1 99 52.5
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 6.9e-21 104.0 99 49.5
AagrBONN_evm.TU.Sc2ySwM_228.5790 Anthoceros agrestis HOM05D001816 ORTHO05D002001 1.2e-20 103.2 102 56.9
AagrBONN_evm.TU.Sc2ySwM_344.917 Anthoceros agrestis HOM05D001816 ORTHO05D002001 1.5e-20 102.8 102 56.9
Glyma.12G027800 Glycine max HOM05D001816 ORTHO05D002001 1.5e-20 102.8 93 51.6
Lalb_Chr01g0001481 Lupinus albus HOM05D001816 ORTHO05D002001 5.8e-20 100.9 99 50.5
Pp3c27_7320 Physcomitrium patens HOM05D001816 ORTHO05D002001 3.2e-18 95.1 99 53.5
CBR_g34895 Chara braunii HOM05D001816 ORTHO05D002001 5.4e-18 94.4 102 47.1
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 1.6e-17 92.8 129 45.0
Sp3g25110 Schrenkiella parvula HOM05D001816 ORTHO05D002001 2.7e-17 92.0 102 47.1
Os10g0182000 Oryza sativa ssp. japonica HOM05D001816 ORTHO05D002001 2.1e-14 82.4 99 43.4
C05p34040 Brassica napus HOM05D001816 ORTHO05D002001 4.0e-13 78.2 71 59.2
BolC5t32139H Brassica oleracea HOM05D001816 ORTHO05D002001 2.0e-12 75.9 70 58.6
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 5.8e-12 74.3 99 46.5
GSVIVG01024313001 Vitis vinifera HOM05D001816 ORTHO05D002001 5.8e-12 74.3 55 63.6
Potri.007G070250 Populus trichocarpa HOM05D001816 ORTHO05D002001 1.3e-11 73.2 46 67.4
MBI02_g31764_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 5.5e-10 67.8 49 67.3
MBI12_g22457_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 7.1e-10 67.4 49 67.3
Cre02.g143200 Chlamydomonas reinhardtii HOM05D001816 ORTHO05D002001 4.6e-09 64.7 99 40.4
PRCOL_00001517 Prasinoderma coloniale HOM05D001816 ORTHO05D002001 7.9e-09 63.9 102 40.2
BcaC05g27449 Brassica carinata HOM05D001816 ORTHO05D002001 1.3e-06 56.6 58 55.2
MCO03G183 Micromonas commoda HOM05D001816 ORTHO05D002001 1.6e-06 56.2 89 39.3
MELO3C028540.2 Cucumis melo HOM05D001816 ORTHO05D002001 6.2e-06 54.3 53 50.9


User provided reference genes

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