Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 5.8e-220 767.3 404 100.0
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 4.1e-80 302.8 282 56.7
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 5.3e-80 302.4 237 64.6
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 9.1e-80 301.6 283 57.6
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 1.7e-78 297.4 281 57.7
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.8e-78 296.2 284 56.3
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 8.5e-78 295.0 284 56.3
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 8.5e-78 295.0 284 56.3
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 2.5e-77 293.5 283 56.2
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 1.2e-76 291.2 287 56.1
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.6e-76 290.8 283 55.5
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 2.7e-76 290.0 283 55.5
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 3.6e-76 289.7 286 57.7
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 3.6e-76 289.7 280 53.6
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 3.6e-76 289.7 284 54.9
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 3.9e-75 286.2 286 55.2
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 3.9e-75 286.2 286 55.2
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 3.9e-75 286.2 280 56.1
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 6.7e-75 285.4 283 55.1
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 1.1e-74 284.6 281 54.1
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.5e-74 284.3 284 54.9
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 2.0e-74 283.9 285 53.3
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 2.6e-74 283.5 281 53.4
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 5.7e-74 282.3 283 54.1
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 2.8e-73 280.0 216 63.0
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 4.8e-73 279.3 280 53.9
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 4.8e-73 279.3 281 54.4
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 6.3e-73 278.9 284 53.9
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 8.2e-73 278.5 281 54.4
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 1.1e-72 278.1 286 52.1
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 1.8e-72 277.3 284 54.2
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 2.4e-72 276.9 282 53.9
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 3.1e-72 276.6 233 60.9
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 3.1e-72 276.6 233 60.9
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 3.1e-72 276.6 284 52.8
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 1.2e-71 274.6 284 52.8
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 1.6e-71 274.2 282 52.1
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 2.6e-71 273.5 240 60.4
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 4.5e-71 272.7 284 52.5
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 5.9e-71 272.3 284 52.1
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 7.7e-71 271.9 219 60.7
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 1.0e-70 271.6 285 52.3
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.3e-70 271.2 286 55.2
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 1.3e-70 271.2 270 53.0
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 1.7e-70 270.8 218 61.5
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 1.7e-70 270.8 238 57.1
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 2.2e-70 270.4 241 57.7
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 2.9e-70 270.0 284 51.8
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 2.9e-70 270.0 289 51.9
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 3.8e-70 269.6 284 51.4
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 3.8e-70 269.6 284 51.4
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 3.8e-70 269.6 284 52.5
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 5.0e-70 269.2 239 59.4
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 6.5e-70 268.9 284 51.4
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 6.5e-70 268.9 287 52.6
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 8.5e-70 268.5 284 51.1
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 8.5e-70 268.5 216 63.0
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 8.5e-70 268.5 286 53.5
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 8.5e-70 268.5 287 50.5
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 8.5e-70 268.5 282 52.5
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.1e-69 268.1 269 54.6
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 1.5e-69 267.7 285 50.5
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 1.5e-69 267.7 284 51.1
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 1.5e-69 267.7 284 52.8
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 1.9e-69 267.3 282 52.8
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.5e-69 266.9 268 54.5
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 3.2e-69 266.5 233 56.7
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 3.2e-69 266.5 215 58.6
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 4.2e-69 266.2 288 50.3
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 7.2e-69 265.4 284 51.1
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 7.2e-69 265.4 226 59.7
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 9.4e-69 265.0 218 60.6
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 1.6e-68 264.2 280 48.9
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 2.7e-68 263.5 282 51.8
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 2.7e-68 263.5 284 52.1
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 3.6e-68 263.1 233 55.8
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 3.6e-68 263.1 281 51.2
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 3.6e-68 263.1 234 56.8
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 6.1e-68 262.3 290 50.7
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 1.0e-67 261.5 282 50.4
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 1.4e-67 261.2 283 49.5
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.4e-67 261.2 269 53.2
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 1.4e-67 261.2 283 51.2
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 1.8e-67 260.8 311 49.2
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 1.8e-67 260.8 236 55.1
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 1.8e-67 260.8 285 50.9
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 2.3e-67 260.4 283 49.8
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 3.0e-67 260.0 310 45.8
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 4.0e-67 259.6 309 48.5
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 6.7e-67 258.8 269 51.3
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 8.8e-67 258.5 340 44.4
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 2.0e-66 257.3 233 57.1
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 1.7e-65 254.2 282 50.0
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 2.8e-65 253.4 221 57.5
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.1e-64 251.5 247 53.0
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 1.8e-64 250.8 324 46.0
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 3.1e-64 250.0 287 48.8
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.1e-61 241.5 287 49.5
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 1.1e-61 241.5 272 51.8
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 2.3e-59 233.8 233 55.4
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 4.0e-59 233.0 192 60.9
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 7.5e-58 228.8 230 54.3
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.8e-57 226.9 231 54.5
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 8.3e-57 225.3 267 46.8
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 4.1e-56 223.0 193 56.0
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 4.1e-56 223.0 198 55.1
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 5.9e-55 219.2 176 59.7
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.1e-53 214.9 219 52.1
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 2.5e-53 213.8 236 50.4
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 4.0e-51 206.5 290 42.8
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.6e-47 194.5 160 59.4
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 5.9e-47 192.6 210 45.7
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 9.5e-45 185.3 215 50.7
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.8e-44 183.7 207 50.7
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 3.0e-43 180.3 243 45.3
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 2.6e-42 177.2 212 48.1
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 4.4e-42 176.4 182 53.3
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 1.7e-41 174.5 148 62.2
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.2e-41 174.1 230 46.5
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 1.9e-40 171.0 175 52.6
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 1.1e-37 161.8 298 35.6
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 1.9e-37 161.0 118 64.4
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 4.4e-34 149.8 273 36.6
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 1.7e-33 147.9 227 42.3
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 2.2e-33 147.5 233 38.6
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 4.1e-32 143.3 118 59.3
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 6.0e-31 139.4 105 63.8
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 7.8e-31 139.0 108 58.3
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 8.9e-27 125.6 125 54.4
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 2.6e-26 124.0 285 33.3
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 5.8e-26 122.9 106 53.8
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.3e-22 110.9 155 44.5
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.1e-21 108.6 74 70.3
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 6.2e-20 102.8 200 36.5
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 5.2e-19 99.8 179 37.4
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 2.0e-18 97.8 218 33.5
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 8.4e-17 92.4 220 30.9
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 5.1e-14 83.2 241 27.4
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 8.7e-06 55.8 44 61.4


User provided reference genes

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