Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.3e-188 662.9 342 100.0
AL8G42910 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.2e-146 523.5 364 80.2
AT4G11250 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.2e-146 523.5 348 83.6
Sp2g28440 Schrenkiella parvula HOM05D006887 ORTHO05D004325 7.7e-88 328.2 354 59.0
Carub.0008s2621 Capsella rubella HOM05D006887 ORTHO05D004325 1.4e-81 307.4 276 65.2
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 4.7e-77 292.4 337 54.9
AL7G49930 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.4e-76 290.8 403 50.1
BcaC03g18328 Brassica carinata HOM05D006887 ORTHO05D004325 4.8e-74 282.3 361 51.2
A02p43880 Brassica napus HOM05D006887 ORTHO05D004325 6.3e-74 282.0 355 51.5
BraA02t09311Z Brassica rapa HOM05D006887 ORTHO05D004325 6.3e-74 282.0 355 51.5
C02p64040 Brassica napus HOM05D006887 ORTHO05D004325 2.4e-73 280.0 361 51.0
BolC2t12470H Brassica oleracea HOM05D006887 ORTHO05D004325 2.4e-73 280.0 361 51.0
Carub.0003s3325 Capsella rubella HOM05D006887 ORTHO05D004325 2.7e-61 240.0 388 48.2
AL7G50480 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.8e-60 237.3 269 56.1
AL7G50550 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 5.2e-60 235.7 363 47.4
Carub.0007s3559 Capsella rubella HOM05D006887 ORTHO05D004325 8.8e-60 235.0 373 49.9
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.1e-57 228.0 299 52.5
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 2.4e-57 226.9 380 45.8
Carub.0007s3594 Capsella rubella HOM05D006887 ORTHO05D004325 7.0e-57 225.3 366 46.7
Carub.0007s3561 Capsella rubella HOM05D006887 ORTHO05D004325 2.0e-56 223.8 351 47.3
AT5G38740 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 6.6e-55 218.8 295 49.8
AT5G41200 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.6e-53 213.0 277 52.7
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.8e-52 210.7 211 63.0
AT5G40220 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.4e-49 201.1 265 52.5
AT5G40120 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.8e-49 200.7 267 55.4
AT5G39750 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 7.8e-48 195.3 306 45.4
A04p12980 Brassica napus HOM05D006887 ORTHO05D004325 7.8e-48 195.3 331 45.0
BcaB06g27394 Brassica carinata HOM05D006887 ORTHO05D004325 2.3e-47 193.7 333 45.0
BcaB06g27414 Brassica carinata HOM05D006887 ORTHO05D004325 6.6e-47 192.2 338 44.4
CARHR058360 Cardamine hirsuta HOM05D006887 ORTHO05D004325 4.3e-46 189.5 251 54.6
BcaB08g34810 Brassica carinata HOM05D006887 ORTHO05D004325 1.2e-45 188.0 352 44.0
BraA04t16961Z Brassica rapa HOM05D006887 ORTHO05D004325 6.8e-44 182.2 352 43.8
A04p13000 Brassica napus HOM05D006887 ORTHO05D004325 2.0e-43 180.6 344 44.5
A04p12860 Brassica napus HOM05D006887 ORTHO05D004325 1.4e-41 174.5 351 42.2
BolC4t26255H Brassica oleracea HOM05D006887 ORTHO05D004325 1.4e-41 174.5 331 42.6
BraA04t16949Z Brassica rapa HOM05D006887 ORTHO05D004325 2.4e-41 173.7 349 42.4
AT5G39810 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 7.8e-40 168.7 296 43.9
CARHR279290 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.3e-39 167.9 276 48.9
BcaB06g27671 Brassica carinata HOM05D006887 ORTHO05D004325 1.1e-36 158.3 327 39.1
BolC4t26262H Brassica oleracea HOM05D006887 ORTHO05D004325 6.8e-36 155.6 342 41.2
C04p46750 Brassica napus HOM05D006887 ORTHO05D004325 8.9e-36 155.2 274 43.8
C04p46670 Brassica napus HOM05D006887 ORTHO05D004325 1.2e-35 154.8 277 41.5
BraA04t16959Z Brassica rapa HOM05D006887 ORTHO05D004325 4.4e-35 152.9 334 41.0
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.9e-33 147.5 205 47.3
BcaB06g27442 Brassica carinata HOM05D006887 ORTHO05D004325 7.0e-33 145.6 309 40.1
C04p46390 Brassica napus HOM05D006887 ORTHO05D004325 7.0e-33 145.6 324 38.3
Carub.0003s1843 Capsella rubella HOM05D006887 ORTHO05D004325 2.1e-32 144.1 348 35.1
BcaB06g27670 Brassica carinata HOM05D006887 ORTHO05D004325 7.8e-32 142.1 316 37.7
AT3G18650 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.0e-31 141.7 282 39.7
AT5G37415 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.0e-31 141.7 166 51.8
BcaB06g27392 Brassica carinata HOM05D008478 ORTHO05D000740 6.6e-31 139.0 292 39.0
Thhalv10028281m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.9e-30 137.5 217 48.4
BcaB06g25916 Brassica carinata HOM05D006887 ORTHO05D004325 3.3e-30 136.7 247 42.9
BcaC05g28586 Brassica carinata HOM05D006887 ORTHO05D004325 3.3e-30 136.7 326 36.5
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 7.3e-30 135.6 311 36.7
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 9.5e-30 135.2 287 38.3
BolC4t26260H Brassica oleracea HOM05D006887 ORTHO05D004325 1.2e-29 134.8 335 39.4
BolC5t33421H Brassica oleracea HOM05D006887 ORTHO05D004325 2.1e-29 134.0 326 36.5
BraA05t21939Z Brassica rapa HOM05D006887 ORTHO05D004325 4.7e-29 132.9 248 41.1
CARHR157630 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.8e-28 131.0 165 47.3
AL3G31960 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 2.3e-28 130.6 208 45.7
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 6.8e-28 129.0 338 36.1
BcaC09g48822 Brassica carinata HOM05D006887 ORTHO05D004325 7.5e-27 125.6 257 40.1
C01p45590 Brassica napus HOM05D006887 ORTHO05D004325 7.5e-27 125.6 257 40.1
BolC1t04520H Brassica oleracea HOM05D006887 ORTHO05D004325 7.5e-27 125.6 257 40.1
BcaC01g03686 Brassica carinata HOM05D006887 ORTHO05D004325 1.3e-26 124.8 218 42.7
C03p49630 Brassica napus HOM05D006887 ORTHO05D004325 1.3e-26 124.8 218 42.7
CARHR283740 Cardamine hirsuta HOM05D006887 ORTHO05D004325 5.4e-25 119.4 194 43.8
A01p35810 Brassica napus HOM05D006887 ORTHO05D004325 3.0e-23 113.6 254 35.0
BraA01t03660Z Brassica rapa HOM05D006887 ORTHO05D004325 3.9e-23 113.2 146 47.9
Carub.0007s3592 Capsella rubella HOM05D006887 ORTHO05D004325 1.6e-21 107.8 142 50.0
Thhalv10022126m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 4.0e-20 103.2 369 33.1
BcaB06g27440 Brassica carinata HOM05D006887 ORTHO05D004325 6.4e-18 95.9 81 63.0
CARHR262050 Cardamine hirsuta HOM05D006887 ORTHO05D004325 4.2e-17 93.2 62 74.2
Carub.0006s2523 Capsella rubella HOM05D007946 ORTHO05D004325 5.4e-17 92.8 217 35.0
Thhalv10002808m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 2.7e-16 90.5 241 33.6
THA.LOC109116041 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 7.8e-16 89.0 167 38.3
Carub.0006s2465 Capsella rubella HOM05D007946 ORTHO05D004325 1.3e-15 88.2 262 34.4
THA.LOC109116042 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.3e-15 88.2 134 42.5
THA.LOC104804829 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.7e-15 87.8 180 37.2
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.3e-15 87.4 297 29.6
CARHR112470 Cardamine hirsuta HOM05D006887 ORTHO05D004325 8.7e-15 85.5 185 37.8
THA.LOC104810872 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.5e-14 84.7 165 35.2
A09p48100 Brassica napus HOM05D007946 ORTHO05D004325 4.3e-14 83.2 240 35.4
BraA04t16923Z Brassica rapa HOM05D006887 ORTHO05D004325 1.6e-13 81.3 170 38.8
Sp5g22080 Schrenkiella parvula HOM05D007946 ORTHO05D004325 4.7e-13 79.7 183 33.9
AL6G40080 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 1.1e-12 78.6 251 30.3
CARHR186490 Cardamine hirsuta HOM05D007946 ORTHO05D004325 2.4e-12 77.4 125 43.2
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.4e-12 77.4 165 33.9
CARHR186690 Cardamine hirsuta HOM05D007946 ORTHO05D004325 5.3e-12 76.3 125 43.2
Aa31LG8G6760 Aethionema arabicum HOM05D006887 ORTHO05D004325 1.2e-11 75.1 121 37.2
BcaNung06357 Brassica carinata HOM05D007946 ORTHO05D004325 1.5e-11 74.7 175 34.3
BolC6t35593H Brassica oleracea HOM05D007946 ORTHO05D004325 1.5e-11 74.7 175 34.3
BcaB01g00130 Brassica carinata HOM05D007946 ORTHO05D004325 2.0e-11 74.3 269 31.2
AL6G38970 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 7.6e-11 72.4 237 31.2
AT5G27050 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 9.9e-11 72.0 117 41.0
AL6G40090 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 1.3e-10 71.6 238 31.5
Thhalv10005435m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.3e-10 71.6 251 29.1
A07p32380 Brassica napus HOM05D007946 ORTHO05D004325 3.8e-10 70.1 248 32.3
BraA07t30861Z Brassica rapa HOM05D007946 ORTHO05D004325 3.8e-10 70.1 248 32.3
AL6G38960 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 4.9e-10 69.7 295 28.5
AT5G27944 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 6.4e-10 69.3 236 30.5
C06p03120 Brassica napus HOM05D007946 ORTHO05D004325 1.1e-09 68.6 179 33.5
BolC6t35430H Brassica oleracea HOM05D007946 ORTHO05D004325 1.1e-09 68.6 179 33.5
AT5G26865 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.4e-09 68.2 124 40.3
AT5G27580 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.4e-09 68.2 231 29.0
BcaC08g43051 Brassica carinata HOM05D007946 ORTHO05D004325 1.4e-09 68.2 165 35.8
A09p32540 Brassica napus HOM05D007946 ORTHO05D004325 1.4e-09 68.2 260 31.2
C08p30340 Brassica napus HOM05D007946 ORTHO05D004325 1.9e-09 67.8 245 31.0
Haze_14940 Corylus avellana HOM05D006887 ORTHO05D009969 1.9e-09 67.8 145 31.0
BcaC08g46035 Brassica carinata HOM05D007946 ORTHO05D004325 2.4e-09 67.4 259 30.1
A09p32530 Brassica napus HOM05D007946 ORTHO05D004325 2.4e-09 67.4 283 30.7
C08p30320 Brassica napus HOM05D007946 ORTHO05D004325 2.4e-09 67.4 286 30.1
AT5G26950 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 3.2e-09 67.0 245 30.2
AT5G40070 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 7.1e-09 65.9 185 36.2
Cfa007171 Carpinus fangiana HOM05D006887 ORTHO05D009969 7.1e-09 65.9 144 29.9
BcaB04g17058 Brassica carinata HOM05D007946 ORTHO05D004325 9.3e-09 65.5 222 28.8
Thhalv10005452m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.2e-08 65.1 313 28.8
BolC8t50656H Brassica oleracea HOM05D007946 ORTHO05D004325 1.6e-08 64.7 240 31.7
BraA09t38796Z Brassica rapa HOM05D007946 ORTHO05D004325 2.1e-08 64.3 260 31.9
BraA09t38795Z Brassica rapa HOM05D007946 ORTHO05D004325 2.7e-08 63.9 280 31.1
FvH4_6g46801 Fragaria vesca HOM05D006887 ORTHO05D004325 4.6e-08 63.2 81 37.0
BraA09t40264Z Brassica rapa HOM05D007946 ORTHO05D004325 6.0e-08 62.8 250 30.8
BcaC07g39831 Brassica carinata HOM05D007946 ORTHO05D004325 7.8e-08 62.4 211 32.2
BcaB03g15376 Brassica carinata HOM05D007946 ORTHO05D004325 1.3e-07 61.6 274 29.9
ATR0605G195 Amborella trichopoda HOM05D000307 ORTHO05D000166 1.7e-07 61.2 131 31.3
Aa31LG8G6650 Aethionema arabicum HOM05D006887 ORTHO05D004325 2.3e-07 60.8 120 35.0
AT5G27090 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 2.3e-07 60.8 188 30.9
THA.LOC104801949 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.3e-07 60.8 87 40.2
THA.LOC104801951 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.3e-07 60.8 87 40.2
THA.LOC104825360 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.3e-07 60.8 87 40.2
ATR0075G005 Amborella trichopoda HOM05D006887 ORTHO05D004325 3.0e-07 60.5 49 59.2
Sp1g35160 Schrenkiella parvula HOM05D007946 ORTHO05D004325 3.0e-07 60.5 225 32.9
BcaB06g27436 Brassica carinata HOM05D006887 ORTHO05D004325 3.9e-07 60.1 131 42.7
Potri.008G020300 Populus trichocarpa HOM05D015295 ORTHO05D009969 5.1e-07 59.7 112 32.1
AT5G27070 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 8.7e-07 58.9 292 27.7
BraA06t23637Z Brassica rapa HOM05D007946 ORTHO05D004325 8.7e-07 58.9 242 29.8
QL10p050899 Quercus lobata HOM05D006887 ORTHO05D009969 8.7e-07 58.9 53 52.8
ATR0626G033 Amborella trichopoda HOM05D000307 ORTHO05D000166 1.1e-06 58.5 171 27.5
Cpa.g.sc192.10 Carica papaya HOM05D006887 ORTHO05D004325 1.1e-06 58.5 78 39.7
Potri.004G222200 Populus trichocarpa HOM05D006887 ORTHO05D009969 1.5e-06 58.2 141 28.4
BolC6t35452H Brassica oleracea HOM05D007946 ORTHO05D004325 1.9e-06 57.8 219 31.5
Sabra01G0168300 Salix brachista HOM05D006887 ORTHO05D004325 1.9e-06 57.8 139 28.8
A06p04330 Brassica napus HOM05D007946 ORTHO05D004325 4.3e-06 56.6 252 28.6
Cfa015195 Carpinus fangiana HOM05D006887 ORTHO05D009969 4.3e-06 56.6 49 55.1
Haze_01459 Corylus avellana HOM05D006887 ORTHO05D009969 4.3e-06 56.6 49 55.1
Sabra08G0013600 Salix brachista HOM05D015295 ORTHO05D009969 4.3e-06 56.6 112 31.2
Aa31LG11G7790 Aethionema arabicum HOM05D006887 ORTHO05D004325 5.6e-06 56.2 123 35.8
A08p14850 Brassica napus HOM05D007946 ORTHO05D004325 5.6e-06 56.2 256 27.0
Cpa.g.sc365.3 Carica papaya HOM05D006887 ORTHO05D009969 5.6e-06 56.2 136 30.9
FAN04G1442 Fragaria x ananassa HOM05D016120 ORTHO05D013324 5.6e-06 56.2 173 28.9
THA.LOC104820442 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 5.6e-06 56.2 141 30.5
BcaNung06274 Brassica carinata HOM05D007946 ORTHO05D004325 7.3e-06 55.8 213 28.2
Actinidia23430 Actinidia chinensis HOM05D006887 ORTHO05D009969 9.6e-06 55.5 71 45.1
Aa31LG8G6660 Aethionema arabicum HOM05D006887 ORTHO05D004325 9.6e-06 55.5 132 30.3
A07p06920 Brassica napus HOM05D007946 ORTHO05D004325 9.6e-06 55.5 274 26.6
BraA07t28483Z Brassica rapa HOM05D007946 ORTHO05D004325 9.6e-06 55.5 274 26.6
Lj1g0022539 Lotus japonicus HOM05D008089 ORTHO05D000166 9.6e-06 55.5 132 28.8


User provided reference genes

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