Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G40220 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.5e-170 602.8 325 100.0
AT5G41200 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.3e-129 466.8 332 82.2
AL7G50550 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 3.0e-110 402.5 283 79.9
AL7G49930 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 6.3e-108 394.8 283 78.8
AT5G40120 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.1e-107 394.0 269 83.3
AL7G50480 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 2.6e-101 372.9 290 73.8
AT5G38740 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.7e-100 370.2 398 57.8
AT5G39750 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 6.8e-94 348.2 241 78.8
Carub.0007s3561 Capsella rubella HOM05D006887 ORTHO05D004325 1.1e-86 324.3 280 68.6
Carub.0003s3325 Capsella rubella HOM05D006887 ORTHO05D004325 1.2e-82 310.8 264 67.8
Carub.0007s3594 Capsella rubella HOM05D006887 ORTHO05D004325 8.6e-81 304.7 265 68.7
AT5G39810 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 9.5e-80 301.2 225 73.3
Carub.0007s3559 Capsella rubella HOM05D006887 ORTHO05D004325 9.9e-77 291.2 278 64.0
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 5.8e-61 238.8 268 56.3
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 4.8e-55 219.2 273 53.8
AT5G37415 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.5e-50 203.0 165 69.7
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.3e-49 201.1 265 52.5
AL8G42910 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 4.3e-48 196.1 276 48.9
A04p12980 Brassica napus HOM05D006887 ORTHO05D004325 7.4e-48 195.3 276 47.5
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 4.8e-47 192.6 278 47.1
BcaB08g34810 Brassica carinata HOM05D006887 ORTHO05D004325 6.2e-47 192.2 281 50.5
BcaB06g27394 Brassica carinata HOM05D006887 ORTHO05D004325 1.8e-46 190.7 284 49.3
BcaB06g27414 Brassica carinata HOM05D006887 ORTHO05D004325 1.8e-46 190.7 321 42.4
AT4G11250 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 5.8e-45 185.7 263 48.3
BcaB06g27671 Brassica carinata HOM05D006887 ORTHO05D004325 3.8e-44 183.0 274 45.6
BraA04t16959Z Brassica rapa HOM05D006887 ORTHO05D004325 1.4e-43 181.0 261 49.8
C04p46750 Brassica napus HOM05D006887 ORTHO05D004325 7.1e-43 178.7 267 47.9
BcaB06g27442 Brassica carinata HOM05D006887 ORTHO05D004325 9.3e-43 178.3 255 50.2
C04p46670 Brassica napus HOM05D006887 ORTHO05D004325 9.3e-43 178.3 279 45.2
BolC4t26262H Brassica oleracea HOM05D006887 ORTHO05D004325 1.6e-42 177.6 245 49.4
BraA04t16949Z Brassica rapa HOM05D006887 ORTHO05D004325 1.6e-42 177.6 267 47.6
BraA04t16961Z Brassica rapa HOM05D006887 ORTHO05D004325 1.6e-42 177.6 278 49.3
BolC4t26255H Brassica oleracea HOM05D006887 ORTHO05D004325 2.1e-42 177.2 279 44.8
C04p46390 Brassica napus HOM05D006887 ORTHO05D004325 6.0e-42 175.6 281 45.6
BolC4t26260H Brassica oleracea HOM05D006887 ORTHO05D004325 1.0e-41 174.9 269 48.3
A04p12860 Brassica napus HOM05D006887 ORTHO05D004325 3.0e-41 173.3 269 46.5
A04p13000 Brassica napus HOM05D006887 ORTHO05D004325 3.0e-41 173.3 285 44.9
C02p64040 Brassica napus HOM05D006887 ORTHO05D004325 3.0e-41 173.3 275 45.5
BolC2t12470H Brassica oleracea HOM05D006887 ORTHO05D004325 3.0e-41 173.3 275 45.5
BcaC03g18328 Brassica carinata HOM05D006887 ORTHO05D004325 5.1e-41 172.6 275 45.5
A02p43880 Brassica napus HOM05D006887 ORTHO05D004325 5.1e-41 172.6 271 47.2
BraA02t09311Z Brassica rapa HOM05D006887 ORTHO05D004325 5.1e-41 172.6 271 47.2
Sp2g28440 Schrenkiella parvula HOM05D006887 ORTHO05D004325 1.5e-40 171.0 249 46.6
BcaB06g27392 Brassica carinata HOM05D008478 ORTHO05D000740 1.9e-40 170.6 326 42.6
Carub.0007s3592 Capsella rubella HOM05D006887 ORTHO05D004325 2.5e-40 170.2 155 68.4
CARHR058360 Cardamine hirsuta HOM05D006887 ORTHO05D004325 9.6e-40 168.3 249 48.2
Thhalv10028281m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 9.0e-38 161.8 257 47.1
Carub.0008s2621 Capsella rubella HOM05D006887 ORTHO05D004325 1.5e-37 161.0 264 45.5
AT5G40070 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.6e-34 149.8 244 48.8
BcaB06g27670 Brassica carinata HOM05D006887 ORTHO05D004325 1.0e-33 148.3 272 41.9
Carub.0003s1843 Capsella rubella HOM05D006887 ORTHO05D004325 1.6e-31 141.0 201 44.8
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 2.4e-30 137.1 218 43.6
AT3G18650 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.0e-29 134.0 205 42.4
BraA05t21939Z Brassica rapa HOM05D006887 ORTHO05D004325 7.7e-29 132.1 227 43.6
BcaC05g28586 Brassica carinata HOM05D006887 ORTHO05D004325 6.5e-28 129.0 227 43.6
BolC5t33421H Brassica oleracea HOM05D006887 ORTHO05D004325 4.2e-27 126.3 268 40.3
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 9.4e-27 125.2 206 43.2
BcaB06g27440 Brassica carinata HOM05D006887 ORTHO05D004325 2.1e-26 124.0 85 74.1
AL3G31960 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 2.7e-26 123.6 196 39.8
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.9e-25 119.8 198 43.9
BcaB06g25916 Brassica carinata HOM05D006887 ORTHO05D004325 5.1e-25 119.4 282 36.2
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 2.6e-24 117.1 263 37.6
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 8.2e-23 112.1 181 42.5
CARHR283740 Cardamine hirsuta HOM05D006887 ORTHO05D004325 8.2e-23 112.1 192 42.2
BcaC01g03686 Brassica carinata HOM05D006887 ORTHO05D004325 1.1e-22 111.7 273 36.6
C03p49630 Brassica napus HOM05D006887 ORTHO05D004325 1.1e-22 111.7 273 36.6
CARHR157630 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.4e-22 111.3 184 42.4
CARHR262050 Cardamine hirsuta HOM05D006887 ORTHO05D004325 3.1e-22 110.2 69 75.4
BcaC09g48822 Brassica carinata HOM05D006887 ORTHO05D004325 2.0e-21 107.5 253 36.4
C01p45590 Brassica napus HOM05D006887 ORTHO05D004325 2.0e-21 107.5 253 36.4
BolC1t04520H Brassica oleracea HOM05D006887 ORTHO05D004325 2.0e-21 107.5 253 36.4
Carub.0006s2523 Capsella rubella HOM05D007946 ORTHO05D004325 2.6e-21 107.1 236 37.7
A01p35810 Brassica napus HOM05D006887 ORTHO05D004325 2.9e-20 103.6 183 42.6
AL6G38970 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 1.1e-19 101.7 232 38.4
Carub.0006s2465 Capsella rubella HOM05D007946 ORTHO05D004325 1.9e-19 100.9 241 34.4
BraA01t03660Z Brassica rapa HOM05D006887 ORTHO05D004325 7.2e-19 99.0 148 45.3
AL6G40080 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 6.1e-18 95.9 253 34.0
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.1e-18 95.9 165 40.0
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.4e-17 94.7 186 39.2
Thhalv10022126m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 3.0e-17 93.6 241 37.8
CARHR186490 Cardamine hirsuta HOM05D007946 ORTHO05D004325 8.8e-17 92.0 110 51.8
AL6G38960 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 1.1e-16 91.7 231 36.8
A09p48100 Brassica napus HOM05D007946 ORTHO05D004325 1.1e-16 91.7 200 38.0
CARHR186690 Cardamine hirsuta HOM05D007946 ORTHO05D004325 1.1e-16 91.7 110 51.8
AL6G40090 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 1.5e-16 91.3 236 36.9
Thhalv10002808m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 5.7e-16 89.4 230 34.8
Sp5g22080 Schrenkiella parvula HOM05D007946 ORTHO05D004325 5.7e-16 89.4 214 35.0
THA.LOC104810872 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 5.7e-16 89.4 168 38.7
BcaB01g00130 Brassica carinata HOM05D007946 ORTHO05D004325 1.3e-15 88.2 206 34.5
Thhalv10005435m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.3e-15 88.2 265 31.3
CARHR279290 Cardamine hirsuta HOM05D006887 ORTHO05D004325 3.7e-15 86.7 204 38.7
AT5G26865 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 6.3e-15 85.9 71 63.4
Thhalv10005452m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.8e-14 84.3 261 31.0
AT5G27050 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 3.1e-14 83.6 112 49.1
C08p30320 Brassica napus HOM05D007946 ORTHO05D004325 4.1e-14 83.2 209 34.9
BolC8t50656H Brassica oleracea HOM05D007946 ORTHO05D004325 4.1e-14 83.2 221 35.3
C08p30340 Brassica napus HOM05D007946 ORTHO05D004325 9.1e-14 82.0 221 35.3
A09p32540 Brassica napus HOM05D007946 ORTHO05D004325 1.2e-13 81.6 220 34.5
BcaC08g43051 Brassica carinata HOM05D007946 ORTHO05D004325 2.0e-13 80.9 234 33.8
AT5G27580 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 2.6e-13 80.5 224 35.3
AT5G26950 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.0e-12 78.6 239 32.6
AT5G27070 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.0e-12 78.6 239 33.5
AT5G27944 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.0e-12 78.6 221 35.3
THA.LOC109116042 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.0e-12 78.6 139 36.7
BraA04t16923Z Brassica rapa HOM05D006887 ORTHO05D004325 1.3e-12 78.2 187 37.4
C06p03120 Brassica napus HOM05D007946 ORTHO05D004325 2.2e-12 77.4 233 32.2
BolC6t35430H Brassica oleracea HOM05D007946 ORTHO05D004325 2.2e-12 77.4 233 32.2
BcaNung06357 Brassica carinata HOM05D007946 ORTHO05D004325 3.8e-12 76.6 192 34.9
BolC6t35593H Brassica oleracea HOM05D007946 ORTHO05D004325 3.8e-12 76.6 192 34.9
BraA09t38796Z Brassica rapa HOM05D007946 ORTHO05D004325 5.0e-12 76.3 217 34.6
BcaC08g46035 Brassica carinata HOM05D007946 ORTHO05D004325 6.5e-12 75.9 225 35.1
Aa31LG8G6760 Aethionema arabicum HOM05D006887 ORTHO05D004325 3.2e-11 73.6 239 25.9
THA.LOC109116041 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 4.2e-11 73.2 214 31.8
AT5G27090 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 7.2e-11 72.4 108 44.4
Sp1g35160 Schrenkiella parvula HOM05D007946 ORTHO05D004325 7.2e-11 72.4 216 32.9
THA.LOC104804829 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 7.2e-11 72.4 207 33.3
C06p38290 Brassica napus HOM05D007946 ORTHO05D004325 1.2e-10 71.6 96 49.0
BolC6t38928H Brassica oleracea HOM05D007946 ORTHO05D004325 1.2e-10 71.6 96 49.0
BolC6t35452H Brassica oleracea HOM05D007946 ORTHO05D004325 1.6e-10 71.2 201 31.3
Potri.004G222200 Populus trichocarpa HOM05D006887 ORTHO05D009969 1.6e-10 71.2 147 34.0
BcaB04g17058 Brassica carinata HOM05D007946 ORTHO05D004325 2.7e-10 70.5 205 31.7
THA.LOC104801949 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 8.0e-10 68.9 145 33.8
THA.LOC104801951 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 8.0e-10 68.9 145 33.8
THA.LOC104825360 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 8.0e-10 68.9 145 33.8
Aa31LG11G7790 Aethionema arabicum HOM05D006887 ORTHO05D004325 1.0e-09 68.6 95 44.2
Aa31LG8G6660 Aethionema arabicum HOM05D006887 ORTHO05D004325 1.8e-09 67.8 137 35.8
A07p32380 Brassica napus HOM05D007946 ORTHO05D004325 1.8e-09 67.8 229 31.0
BraA07t30861Z Brassica rapa HOM05D007946 ORTHO05D004325 1.8e-09 67.8 229 31.0
THA.LOC104806918 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 3.0e-09 67.0 131 34.4
BcaB07g33730 Brassica carinata HOM05D007946 ORTHO05D004325 4.0e-09 66.6 271 29.5
BcaB07g33784 Brassica carinata HOM05D007946 ORTHO05D004325 4.0e-09 66.6 271 29.5
BcaNung06274 Brassica carinata HOM05D007946 ORTHO05D004325 4.0e-09 66.6 210 31.4
Cpa.g.sc192.10 Carica papaya HOM05D006887 ORTHO05D004325 5.2e-09 66.2 79 41.8
Atru.chr6.1689 Acer truncatum HOM05D006887 ORTHO05D009969 8.8e-09 65.5 262 27.5
BraA06t23637Z Brassica rapa HOM05D007946 ORTHO05D004325 8.8e-09 65.5 222 29.7
BcaC07g39831 Brassica carinata HOM05D007946 ORTHO05D004325 1.2e-08 65.1 197 33.0
A08p14850 Brassica napus HOM05D007946 ORTHO05D004325 1.2e-08 65.1 217 31.3
BcaB03g15376 Brassica carinata HOM05D007946 ORTHO05D004325 1.5e-08 64.7 245 30.2
Aa31LG8G6650 Aethionema arabicum HOM05D006887 ORTHO05D004325 2.6e-08 63.9 130 33.8
Sabra01G0168300 Salix brachista HOM05D006887 ORTHO05D004325 3.3e-08 63.5 147 32.7
ATR0626G033 Amborella trichopoda HOM05D000307 ORTHO05D000166 4.4e-08 63.2 128 28.9
TAR365G0201 Trochodendron aralioides HOM05D000307 ORTHO05D000166 4.4e-08 63.2 130 33.8
A06p04330 Brassica napus HOM05D007946 ORTHO05D004325 5.7e-08 62.8 225 28.4
BolC6t35438H Brassica oleracea HOM05D007946 ORTHO05D004325 7.5e-08 62.4 103 40.8
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 7.5e-08 62.4 261 26.1
A07p06920 Brassica napus HOM05D007946 ORTHO05D004325 2.2e-07 60.8 241 30.7
BraA07t28483Z Brassica rapa HOM05D007946 ORTHO05D004325 2.2e-07 60.8 241 30.7
BcaC08g43062 Brassica carinata HOM05D007946 ORTHO05D004325 2.8e-07 60.5 229 29.7
C06p03210 Brassica napus HOM05D007946 ORTHO05D004325 2.8e-07 60.5 229 29.7
BcaB07g33736 Brassica carinata HOM05D007946 ORTHO05D004325 3.7e-07 60.1 131 36.6
MBI16_g19060_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 4.8e-07 59.7 138 30.4
MBI16_g19061_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 4.8e-07 59.7 139 30.2
BolC6t35453H Brassica oleracea HOM05D007946 ORTHO05D004325 6.3e-07 59.3 229 29.7
BcaB01g00129 Brassica carinata HOM05D007946 ORTHO05D004325 8.2e-07 58.9 213 31.0
BraA08t33469Z Brassica rapa HOM05D007946 ORTHO05D004325 8.2e-07 58.9 164 31.7
DCAR_007526 Daucus carota HOM05D009853 ORTHO05D009969 1.1e-06 58.5 70 38.6
ATR0605G195 Amborella trichopoda HOM05D000307 ORTHO05D000166 1.4e-06 58.2 136 31.6
FvH4_6g46801 Fragaria vesca HOM05D006887 ORTHO05D004325 1.4e-06 58.2 78 37.2
Zm00001eb243490 Zea mays HOM05D000307 ORTHO05D000166 1.4e-06 58.2 81 38.3
Cfa007171 Carpinus fangiana HOM05D006887 ORTHO05D009969 1.8e-06 57.8 147 27.2
Cfa015195 Carpinus fangiana HOM05D006887 ORTHO05D009969 1.8e-06 57.8 48 56.2
MBI16_g16371_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 1.8e-06 57.8 139 30.2
Potri.010G238900 Populus trichocarpa HOM05D015295 ORTHO05D009969 1.8e-06 57.8 61 41.0
Actinidia23430 Actinidia chinensis HOM05D006887 ORTHO05D009969 2.4e-06 57.4 57 47.4
Cpa.g.sc365.3 Carica papaya HOM05D006887 ORTHO05D009969 2.4e-06 57.4 135 29.6
QL10p050899 Quercus lobata HOM05D006887 ORTHO05D009969 2.4e-06 57.4 52 50.0
PSO063G6417 Papaver somniferum HOM05D000307 ORTHO05D000166 3.1e-06 57.0 87 36.8
Aqoxy5G00368 Aquilegia oxysepala HOM05D000307 ORTHO05D000166 4.1e-06 56.6 152 27.6
BcaC07g39832 Brassica carinata HOM05D007946 ORTHO05D004325 4.1e-06 56.6 228 30.7
Oeu029235.1 Olea europaea HOM05D011412 ORTHO05D009969 4.1e-06 56.6 138 28.3
Ca_15043_v3 Cicer arietinum L. HOM05D000307 ORTHO05D000166 5.3e-06 56.2 90 42.2
MBI16_g16368_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 7.0e-06 55.8 138 28.3
PSO541G0906 Papaver somniferum HOM05D000307 ORTHO05D000166 7.0e-06 55.8 146 28.8
Peaxi162Scf00011g00077 Petunia axillaris HOM05D009853 ORTHO05D009969 7.0e-06 55.8 59 44.1
Sabra10G0187100 Salix brachista HOM05D015295 ORTHO05D009969 7.0e-06 55.8 61 39.3
Haze_01459 Corylus avellana HOM05D006887 ORTHO05D009969 9.1e-06 55.5 148 31.8
MBI07_g09577_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 9.1e-06 55.5 82 35.4
Nn4g24661 Nelumbo nucifera HOM05D000307 ORTHO05D000166 9.1e-06 55.5 150 29.3
Solyc11g020320.1 Solanum lycopersicum HOM05D000307 ORTHO05D000166 9.1e-06 55.5 201 29.4


User provided reference genes

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