Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 0.0e+00 2248.4 1273 100.0
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 4.0e-182 643.3 647 59.0
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 1.1e-179 635.2 555 65.9
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 1.6e-178 631.3 638 58.8
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 3.6e-175 620.2 654 57.6
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.0e-173 614.4 646 57.3
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 9.9e-173 612.1 636 57.5
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 3.8e-172 610.1 648 57.4
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 1.4e-163 581.6 558 61.3
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 4.3e-160 570.1 618 55.8
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 6.9e-158 562.8 624 55.9
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 1.5e-157 561.6 624 55.8
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 2.2e-156 557.8 624 55.3
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 2.2e-156 557.8 624 55.3
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 2.2e-156 557.8 624 55.3
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 6.2e-151 539.7 655 51.5
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 4.6e-138 496.9 645 48.7
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 5.3e-126 456.8 646 45.7
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 1.2e-125 455.7 656 47.0
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 1.9e-123 448.4 664 45.2
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 4.2e-123 447.2 656 44.8
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 9.4e-123 446.0 639 46.2
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 7.9e-122 443.0 656 44.5
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 1.8e-121 441.8 654 45.4
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 1.8e-121 441.8 630 46.0
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 3.0e-121 441.0 654 44.6
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 3.9e-121 440.7 614 45.3
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 3.3e-120 437.6 654 44.3
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 9.7e-120 436.0 614 45.0
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 9.7e-120 436.0 651 44.4
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 1.3e-119 435.6 614 45.4
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.7e-119 435.3 642 44.9
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 2.2e-119 434.9 654 44.2
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 2.4e-118 431.4 615 44.9
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 4.1e-118 430.6 671 42.5
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 2.0e-117 428.3 626 44.4
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 3.5e-117 427.6 666 43.5
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 5.9e-117 426.8 627 45.0
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 7.7e-117 426.4 650 44.8
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 7.7e-117 426.4 629 44.8
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 5.0e-116 423.7 614 44.1
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 5.0e-116 423.7 652 44.0
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 9.4e-115 419.5 652 44.2
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 1.6e-114 418.7 648 42.3
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 2.7e-114 417.9 652 43.9
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 4.7e-114 417.2 643 44.2
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 8.0e-114 416.4 682 41.8
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 8.0e-114 416.4 662 42.0
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 3.0e-113 414.5 651 42.1
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 6.7e-113 413.3 669 42.0
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 1.2e-112 412.5 583 45.5
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 1.2e-112 412.5 697 41.3
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 2.6e-112 411.4 660 42.7
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 6.3e-111 406.8 656 42.7
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.1e-110 406.0 675 41.8
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 2.4e-110 404.8 656 42.8
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 3.1e-110 404.4 653 42.3
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 4.1e-110 404.1 599 43.9
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 2.7e-109 401.4 550 44.7
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 4.5e-109 400.6 641 42.6
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 5.9e-109 400.2 665 40.8
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 1.3e-108 399.1 538 46.8
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 5.0e-108 397.1 579 43.7
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 6.5e-108 396.7 503 50.1
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 1.9e-107 395.2 594 43.8
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 3.2e-107 394.4 618 43.0
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 3.2e-107 394.4 598 44.5
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 1.6e-106 392.1 583 43.7
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 6.1e-106 390.2 664 41.9
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 1.0e-105 389.4 638 41.2
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 1.0e-105 389.4 527 46.5
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 5.2e-105 387.1 706 39.4
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 2.0e-104 385.2 640 41.9
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 8.3e-103 379.8 725 38.2
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 9.1e-102 376.3 595 42.4
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 4.5e-101 374.0 552 44.0
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 5.9e-101 373.6 592 41.6
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 8.6e-100 369.8 456 52.0
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 5.5e-99 367.1 572 43.2
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 2.8e-98 364.8 656 39.5
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 6.1e-98 363.6 630 39.7
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 1.4e-97 362.5 479 47.6
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 1.3e-95 355.9 571 41.2
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 2.4e-94 351.7 596 41.4
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 1.6e-93 349.0 830 34.2
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 5.0e-92 344.0 590 41.2
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.2e-90 339.3 639 38.7
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 3.0e-89 334.7 596 40.4
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 2.2e-87 328.6 623 38.2
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 1.8e-86 325.5 568 40.1
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 3.4e-80 304.7 532 39.3
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 1.6e-77 295.8 563 37.1
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 6.2e-74 283.9 640 33.4
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 1.2e-72 279.6 490 41.2
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 7.1e-70 270.4 611 34.2
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 6.0e-69 267.3 514 37.2
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 3.8e-63 248.1 438 40.2
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.1e-62 246.5 214 59.8
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 7.1e-62 243.8 451 39.0
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 1.9e-59 235.7 420 38.8
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 2.5e-59 235.3 289 48.4
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 4.2e-54 218.0 486 34.6
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 5.6e-51 207.6 545 33.6
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 5.3e-49 201.1 175 61.7
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 5.8e-48 197.6 424 35.8
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 1.0e-44 186.8 698 29.1
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 3.9e-44 184.9 200 53.0
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 5.1e-44 184.5 203 54.2
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 6.7e-44 184.1 169 60.4
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.4e-41 176.4 185 54.1
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 3.1e-41 175.3 175 54.9
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 9.0e-41 173.7 131 68.7
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 1.3e-39 169.9 343 32.9
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 3.8e-39 168.3 215 47.4
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 6.4e-39 167.5 144 60.4
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 1.1e-38 166.8 182 57.7
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.3e-34 153.3 151 56.3
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 4.8e-34 151.4 177 48.0
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 4.8e-34 151.4 171 50.3
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 6.7e-28 131.0 180 47.2
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 6.3e-26 124.4 107 61.7
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 6.3e-26 124.4 148 48.6
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.4e-25 123.2 150 45.3
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 6.9e-25 120.9 231 38.1
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 5.0e-23 114.8 126 52.4
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 1.2e-21 110.2 155 41.9
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 2.1e-21 109.4 300 33.7
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 1.4e-20 106.7 720 22.9
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 4.1e-17 95.1 420 26.2
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 2.2e-15 89.4 151 33.8
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 8.5e-15 87.4 95 47.4
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 1.9e-14 86.3 164 38.4
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 4.2e-14 85.1 166 31.9
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 5.5e-14 84.7 101 45.5
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 7.2e-14 84.3 150 40.0
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 4.4e-11 75.1 73 49.3
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 1.0e-07 63.9 52 61.5
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 1.7e-07 63.2 152 34.2
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 2.2e-07 62.8 38 76.3
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 8.5e-07 60.8 38 73.7
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 7.2e-06 57.8 124 34.7
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 9.4e-06 57.4 32 81.2


User provided reference genes

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