Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 0.0e+00 1367.4 736 100.0
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 0.0e+00 1134.4 842 75.2
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 0.0e+00 1092.8 745 80.7
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 3.7e-281 971.5 755 71.7
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 6.3e-281 970.7 759 71.1
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 8.3e-273 943.7 753 70.5
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 7.1e-232 807.7 749 62.9
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 8.4e-217 757.7 848 56.0
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 5.7e-213 745.0 890 53.5
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 7.4e-213 744.6 848 55.2
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 2.0e-210 736.5 891 53.1
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 3.3e-205 719.2 764 56.9
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 3.7e-204 715.7 849 54.9
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 3.2e-176 622.9 740 53.6
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 1.4e-174 617.5 743 52.5
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 2.3e-166 590.1 741 52.0
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 5.8e-149 532.3 763 43.5
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 9.8e-149 531.6 762 43.7
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 1.3e-148 531.2 753 44.6
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 5.4e-147 525.8 762 45.4
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 2.7e-146 523.5 771 42.5
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 6.0e-146 522.3 776 42.8
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 1.0e-145 521.5 762 43.7
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 3.9e-145 519.6 769 43.2
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 3.9e-145 519.6 762 42.5
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 1.1e-144 518.1 760 47.6
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 1.8e-142 510.8 751 42.3
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 5.2e-142 509.2 762 43.0
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 1.7e-140 504.2 762 42.4
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 2.2e-140 503.8 767 42.4
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 4.9e-140 502.7 766 43.0
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 6.4e-140 502.3 770 42.1
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 8.3e-140 501.9 756 42.2
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.1e-139 501.5 758 42.5
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 1.9e-139 500.7 778 41.8
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 1.9e-139 500.7 766 42.2
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.4e-139 500.4 765 42.2
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 7.1e-139 498.8 781 42.6
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 7.1e-139 498.8 763 42.7
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 7.1e-139 498.8 764 41.9
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 2.1e-138 497.3 764 41.5
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 3.5e-138 496.5 767 41.9
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 6.6e-137 492.3 774 41.0
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 8.6e-137 491.9 757 42.0
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.5e-136 490.3 757 41.1
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 1.2e-135 488.0 756 41.7
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 3.6e-135 486.5 766 41.4
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 6.2e-135 485.7 759 43.1
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 8.1e-135 485.3 771 40.5
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 5.8e-133 479.2 755 41.2
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.4e-131 474.6 778 40.6
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.4e-131 474.6 749 43.0
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 2.4e-131 473.8 754 40.2
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 3.2e-131 473.4 760 41.2
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 5.4e-131 472.6 764 41.5
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 2.7e-130 470.3 780 41.4
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 3.5e-130 469.9 805 39.8
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 6.0e-130 469.2 761 41.1
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 1.3e-129 468.0 763 40.6
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 5.1e-129 466.1 759 41.0
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 3.3e-128 463.4 789 40.2
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 1.6e-127 461.1 760 41.1
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 2.4e-126 457.2 795 40.6
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 4.0e-126 456.4 764 39.8
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 5.2e-126 456.1 743 40.4
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.2e-125 454.9 767 40.2
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 1.5e-125 454.5 751 40.3
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 9.9e-125 451.8 749 38.9
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 1.3e-124 451.4 754 40.6
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 1.1e-123 448.4 725 40.4
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 1.9e-123 447.6 817 37.9
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 4.6e-122 443.0 755 40.7
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 2.8e-119 433.7 751 39.9
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 3.6e-119 433.3 711 43.9
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 4.8e-119 433.0 767 39.8
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 4.8e-119 433.0 750 38.1
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 9.0e-118 428.7 766 38.9
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 9.0e-118 428.7 767 38.6
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 1.2e-117 428.3 810 38.8
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 2.0e-117 427.6 763 39.7
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.3e-116 424.9 758 37.7
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 3.8e-116 423.3 752 40.0
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 9.3e-115 418.7 748 36.8
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 1.6e-114 417.9 769 38.8
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 2.1e-114 417.5 824 38.5
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 6.0e-114 416.0 752 39.1
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 4.8e-111 406.4 821 36.1
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 1.1e-110 405.2 821 35.9
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 1.2e-109 401.7 749 37.0
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 2.2e-108 397.5 809 36.8
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 1.2e-106 391.7 690 38.1
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.8e-105 387.9 671 39.2
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 2.5e-104 384.0 766 39.7
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 4.0e-102 376.7 765 36.9
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.0e-101 374.4 768 36.5
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 1.7e-100 371.3 743 36.2
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 1.1e-99 368.6 742 34.6
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 1.1e-96 358.6 712 36.4
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 5.7e-96 356.3 797 35.0
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 2.8e-95 354.0 748 34.4
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 8.5e-92 342.4 736 34.6
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 7.2e-91 339.3 742 33.6
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 9.7e-88 328.9 431 46.9
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 3.4e-85 320.5 800 33.1
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.4e-85 320.5 757 32.8
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 3.4e-77 293.9 598 36.6
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 6.1e-66 256.5 652 32.1
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 6.3e-63 246.5 323 44.3
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 1.1e-62 245.7 172 73.8
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 1.1e-62 245.7 172 73.8
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.7e-58 231.1 710 30.4
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 5.2e-57 226.9 776 27.4
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 4.5e-53 213.8 732 28.3
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 2.3e-52 211.5 282 45.7
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 6.5e-52 209.9 888 27.0
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.8e-49 201.8 271 40.6
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 2.3e-49 201.4 309 42.7
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 9.5e-43 179.5 217 45.6
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 6.8e-41 173.3 744 26.1
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 4.1e-38 164.1 736 25.8
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 5.0e-36 157.1 454 27.5
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 3.7e-31 141.0 727 26.1
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 3.5e-29 134.4 193 40.4
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 9.9e-24 116.3 118 53.4
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 3.0e-20 104.8 123 48.0
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.1e-17 96.3 90 51.1
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.8e-17 95.5 82 54.9
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 3.1e-17 94.7 212 36.3
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.3e-12 79.3 103 43.7
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 6.6e-12 77.0 148 33.8
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 6.6e-12 77.0 83 45.8
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 4.9e-07 60.8 159 38.4


User provided reference genes

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