Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 0.0e+00 1652.5 866 100.0
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 0.0e+00 1520.0 869 92.3
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 0.0e+00 1337.0 872 82.5
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 0.0e+00 1306.6 877 80.3
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 0.0e+00 1275.8 883 78.9
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 0.0e+00 1249.2 897 77.3
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 0.0e+00 1168.3 929 69.5
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 0.0e+00 1163.3 884 71.7
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 0.0e+00 1151.7 907 69.9
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 0.0e+00 1140.9 884 70.5
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 0.0e+00 1140.2 884 70.5
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 0.0e+00 1114.0 925 67.0
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 5.5e-300 1034.2 918 64.7
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 2.1e-230 803.1 970 49.7
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 2.7e-230 802.7 894 52.6
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 6.0e-230 801.6 953 51.5
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 2.3e-229 799.7 945 51.2
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 6.6e-229 798.1 963 49.4
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 9.6e-228 794.3 920 51.5
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 1.3e-224 783.9 851 53.2
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 4.9e-224 781.9 848 52.6
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 8.4e-224 781.2 962 49.4
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 1.4e-223 780.4 935 50.5
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.4e-223 780.4 982 49.0
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 3.2e-223 779.2 929 50.5
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 6.0e-222 775.0 963 49.0
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 6.0e-222 775.0 918 50.8
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 6.6e-221 771.5 917 50.4
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 1.1e-220 770.8 924 50.3
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 3.3e-220 769.2 977 47.9
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 7.3e-220 768.1 847 53.0
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.6e-219 766.9 894 49.9
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 6.2e-219 765.0 863 50.8
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 8.1e-219 764.6 847 52.7
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 1.8e-218 763.5 924 49.1
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 1.8e-218 763.5 976 48.0
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 1.5e-217 760.4 1035 47.5
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 2.0e-217 760.0 948 48.8
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 1.3e-216 757.3 959 48.5
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 3.8e-216 755.7 910 49.7
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 2.4e-215 753.1 941 49.0
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 7.1e-215 751.5 954 48.4
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 9.3e-215 751.1 951 47.4
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 7.9e-214 748.0 929 49.8
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 1.0e-213 747.7 940 49.5
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 1.0e-213 747.7 863 51.1
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 1.1e-212 744.2 912 50.0
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 1.1e-212 744.2 919 49.8
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 4.3e-212 742.3 948 48.6
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 1.3e-211 740.7 916 48.6
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 1.3e-211 740.7 892 49.0
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 3.7e-211 739.2 887 49.8
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 1.1e-210 737.6 928 49.1
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 1.8e-210 736.9 922 49.2
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 1.5e-209 733.8 932 48.3
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 3.8e-208 729.2 940 46.6
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 3.8e-208 729.2 867 48.7
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 4.9e-208 728.8 935 48.7
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 4.9e-208 728.8 911 50.4
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 8.4e-208 728.0 859 49.2
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 1.9e-207 726.9 922 46.9
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 4.2e-207 725.7 955 46.5
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 4.2e-207 725.7 924 48.6
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 1.3e-205 720.7 891 47.8
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 3.9e-205 719.2 874 47.1
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 3.9e-205 719.2 968 46.1
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 5.6e-204 715.3 883 48.5
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 9.6e-204 714.5 951 46.2
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 1.6e-203 713.8 961 46.0
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 1.6e-203 713.8 935 47.3
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 1.8e-202 710.3 924 49.6
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.0e-200 704.5 974 45.1
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 2.9e-200 703.0 906 46.9
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 1.9e-199 700.3 933 46.2
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 7.1e-199 698.4 887 48.1
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 2.1e-198 696.8 887 47.0
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 2.1e-198 696.8 833 52.1
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 4.6e-198 695.7 944 46.0
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 6.3e-195 685.3 888 46.5
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 1.8e-194 683.7 801 49.8
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 1.2e-193 681.0 821 48.1
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 2.6e-193 679.9 968 44.7
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 5.5e-191 672.2 961 45.4
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 3.6e-190 669.5 981 43.9
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 2.3e-189 666.8 738 52.8
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 4.1e-186 656.0 883 45.2
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 1.9e-183 647.1 870 45.2
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 2.3e-181 640.2 881 46.8
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 7.4e-180 635.2 855 45.4
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 7.4e-180 635.2 827 44.4
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 8.2e-179 631.7 879 43.8
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 2.9e-176 623.2 713 50.2
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 8.2e-171 605.1 689 53.3
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 2.4e-170 603.6 678 50.1
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 4.7e-166 589.3 941 41.1
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 3.1e-162 576.6 855 44.0
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 1.2e-153 548.1 1003 38.7
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 1.1e-151 541.6 583 52.1
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 9.5e-151 538.5 623 50.1
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 5.2e-149 532.7 663 48.4
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 2.8e-147 526.9 688 46.5
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 2.3e-136 490.7 905 36.7
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 3.3e-135 486.9 885 38.2
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 4.0e-133 479.9 893 36.8
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 4.6e-129 466.5 934 36.0
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 2.2e-123 447.6 872 34.5
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 4.2e-106 390.2 477 47.4
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 2.4e-93 347.8 1153 27.1
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 1.1e-87 328.9 385 48.8
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 1.7e-51 208.8 204 53.4
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 1.3e-46 192.6 460 29.8
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 9.1e-45 186.4 391 32.2
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 2.7e-41 174.9 396 30.1
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 1.6e-33 149.1 256 43.0
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 2.9e-27 128.3 314 29.6
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 5.8e-23 114.0 488 23.2
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.7e-22 112.5 138 44.2
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.3e-14 86.3 404 23.8
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 4.9e-14 84.3 196 39.8
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.1e-10 73.2 170 34.7
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 3.3e-10 71.6 87 51.7
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 1.1e-08 66.6 108 37.0


User provided reference genes

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