Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 0.0e+00 1100.9 538 100.0
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 0.0e+00 1086.2 538 98.7
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 0.0e+00 1082.8 541 98.2
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 1.9e-306 1055.0 543 96.5
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 5.6e-303 1043.5 545 93.9
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 1.1e-301 1039.3 543 94.3
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 6.4e-299 1030.0 545 92.8
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 7.4e-287 989.9 541 88.9
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 1.8e-285 985.3 540 89.3
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 1.8e-285 985.3 540 89.3
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 5.5e-282 973.8 541 88.7
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 2.1e-281 971.8 542 88.7
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 3.5e-281 971.1 542 88.6
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 1.5e-279 965.7 545 88.6
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 1.8e-269 932.2 526 85.6
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 1.4e-266 922.5 537 83.8
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 7.9e-265 916.8 534 83.3
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 5.1e-264 914.1 534 83.0
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 8.8e-264 913.3 541 81.1
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 4.8e-262 907.5 543 81.6
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 4.1e-261 904.4 541 80.8
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 1.2e-260 902.9 522 82.6
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 1.2e-260 902.9 541 81.1
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 3.5e-260 901.4 532 81.2
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 3.5e-260 901.4 493 85.2
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 1.0e-259 899.8 542 80.3
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 2.9e-259 898.3 533 80.9
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 3.8e-259 897.9 541 81.3
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 2.5e-258 895.2 533 80.9
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 3.2e-258 894.8 541 80.6
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 3.2e-258 894.8 520 81.9
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 5.5e-258 894.0 532 81.4
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 5.5e-258 894.0 538 79.7
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 7.2e-258 893.6 533 81.4
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 7.2e-258 893.6 533 80.1
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 9.4e-258 893.3 517 81.2
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 1.2e-257 892.9 538 79.7
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 2.1e-257 892.1 541 79.7
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 2.7e-257 891.7 538 80.5
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 4.7e-257 891.0 544 80.5
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 8.0e-257 890.2 542 79.7
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 1.0e-256 889.8 520 81.5
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 1.0e-256 889.8 538 79.4
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 1.8e-256 889.0 530 81.1
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 3.0e-256 888.3 543 79.4
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 3.0e-256 888.3 530 80.0
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 6.7e-256 887.1 530 80.0
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 8.8e-256 886.7 530 79.8
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 1.1e-255 886.3 543 79.7
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 1.5e-255 885.9 559 77.6
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 3.3e-255 884.8 554 77.6
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 7.4e-255 883.6 567 76.2
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 9.7e-255 883.2 529 79.2
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 1.7e-254 882.5 531 79.5
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 1.7e-254 882.5 578 74.9
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 2.2e-254 882.1 494 83.0
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 4.8e-254 880.9 542 78.8
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 1.1e-253 879.8 539 79.2
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 9.1e-253 876.7 592 73.1
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 1.6e-252 875.9 535 78.7
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 4.5e-252 874.4 523 80.3
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 2.2e-251 872.1 525 78.9
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 5.0e-251 870.9 524 78.8
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 5.0e-251 870.9 518 79.3
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 1.1e-250 869.8 535 78.1
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 4.2e-250 867.8 540 77.6
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 9.4e-250 866.7 521 79.8
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 1.2e-249 866.3 538 78.4
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 1.6e-249 865.9 539 78.7
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 2.1e-249 865.5 524 78.4
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 2.1e-249 865.5 524 78.8
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 6.1e-249 864.0 518 79.2
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 1.4e-248 862.8 540 78.5
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 1.8e-248 862.4 533 77.3
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 3.3e-247 858.2 536 76.9
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 7.5e-247 857.1 562 75.3
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 1.7e-246 855.9 537 78.4
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 1.2e-244 849.7 544 77.0
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 4.5e-244 847.8 503 80.3
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 1.7e-243 845.9 508 80.3
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 2.2e-243 845.5 543 77.7
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 5.0e-243 844.3 523 78.0
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 1.9e-242 842.4 469 83.8
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 5.5e-242 840.9 519 78.0
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 1.2e-241 839.7 546 76.2
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 2.7e-241 838.6 514 78.8
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 4.7e-241 837.8 483 80.7
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 1.0e-240 836.6 520 77.3
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 3.0e-240 835.1 543 74.2
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 3.0e-240 835.1 537 76.5
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 1.8e-237 825.9 535 75.5
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 7.0e-237 823.9 541 74.7
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.3e-235 819.7 547 73.1
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 6.6e-235 817.4 535 73.5
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 8.6e-235 817.0 543 73.8
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 1.1e-234 816.6 528 75.4
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 4.2e-234 814.7 543 73.8
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 5.5e-234 814.3 528 75.4
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 7.5e-231 803.9 514 75.9
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 2.3e-227 792.3 556 69.2
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 1.7e-222 776.2 520 72.3
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 6.4e-222 774.2 506 72.9
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.5e-218 763.1 473 75.5
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 3.3e-218 761.9 540 69.8
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 1.4e-213 746.5 529 69.6
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 1.0e-211 740.3 398 85.2
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 1.7e-211 739.6 513 70.6
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 3.9e-211 738.4 426 80.3
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 8.1e-209 730.7 423 80.1
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 7.8e-204 714.1 437 78.5
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.2e-201 706.8 406 88.7
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 1.3e-185 653.7 398 75.9
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 2.0e-183 646.4 410 77.3
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 4.2e-181 638.6 332 87.7
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 1.6e-180 636.7 507 64.9
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 4.5e-159 565.5 492 57.7
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 7.2e-157 558.1 503 56.1
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 1.0e-150 537.7 283 86.9
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.9e-149 533.5 418 65.1
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 5.3e-136 488.8 346 67.9
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 7.7e-135 485.0 451 53.9
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 4.2e-133 479.2 463 52.9
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 6.1e-132 475.3 413 59.6
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 1.8e-120 437.2 335 66.3
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 1.7e-105 387.5 272 72.8
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 1.1e-91 341.7 181 87.3
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 3.5e-87 326.6 228 73.7
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 5.6e-85 319.3 182 82.4
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 4.0e-83 313.2 172 86.0
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 2.6e-58 230.7 135 78.5
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 1.1e-43 182.2 117 74.4
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 4.1e-43 180.3 102 80.4
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 9.7e-37 159.1 81 90.1
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 2.0e-26 124.8 67 80.6
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 6.5e-25 119.8 58 98.3
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 1.9e-24 118.2 60 93.3
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 1.9e-24 118.2 60 93.3
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 6.7e-22 109.8 55 90.9
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 3.7e-20 104.0 50 92.0
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 6.8e-14 83.2 95 47.4


User provided reference genes

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