Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 6.1e-132 474.2 242 100.0
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 3.5e-119 431.8 242 90.5
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 1.1e-117 426.8 242 90.5
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 6.8e-115 417.5 242 86.0
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 8.9e-115 417.2 242 87.2
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 8.9e-115 417.2 242 87.2
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 3.4e-114 415.2 242 86.8
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 2.9e-113 412.1 242 84.7
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 1.1e-112 410.2 242 86.0
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 1.2e-111 406.8 242 86.8
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 2.0e-111 406.0 242 86.0
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.3e-110 403.3 242 84.3
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.3e-110 403.3 242 84.3
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.3e-110 402.5 242 82.2
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 5.6e-109 397.9 242 81.4
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 8.9e-107 390.6 242 80.6
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.3e-99 365.9 241 75.9
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 5.2e-99 364.8 236 78.4
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 1.5e-98 363.2 236 76.7
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 4.4e-98 361.7 235 76.2
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 5.8e-98 361.3 236 76.3
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 7.6e-98 360.9 236 76.3
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 7.6e-98 360.9 229 78.2
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 9.9e-98 360.5 236 75.8
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 2.2e-97 359.4 236 75.8
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 2.2e-97 359.4 236 75.0
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 2.2e-97 359.4 236 75.8
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 2.9e-97 359.0 236 74.2
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 8.3e-97 357.5 236 74.2
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 1.4e-96 356.7 236 74.2
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 2.4e-96 355.9 236 75.0
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 2.4e-96 355.9 236 74.2
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 3.2e-96 355.5 236 75.4
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 4.1e-96 355.1 193 90.7
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 5.4e-96 354.8 236 75.0
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 5.4e-96 354.8 236 75.4
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 7.1e-96 354.4 236 74.6
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.2e-95 353.6 235 75.3
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.2e-95 353.6 235 76.2
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 2.7e-95 352.4 236 75.0
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 3.5e-95 352.1 236 72.5
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 3.5e-95 352.1 229 74.7
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 3.5e-95 352.1 226 75.7
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 4.6e-95 351.7 232 74.6
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 6.0e-95 351.3 236 75.0
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 6.0e-95 351.3 236 73.7
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.8e-95 350.9 235 74.5
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 7.8e-95 350.9 236 73.7
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 1.0e-94 350.5 236 74.6
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.0e-94 350.5 236 73.3
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.0e-94 350.5 235 74.0
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.0e-94 350.5 236 73.3
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 1.3e-94 350.1 236 73.7
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 1.3e-94 350.1 236 73.3
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.7e-94 349.7 235 74.5
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 2.3e-94 349.4 227 77.1
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 3.9e-94 348.6 236 73.7
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 8.6e-94 347.4 233 73.8
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 1.1e-93 347.1 236 73.3
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 1.1e-93 347.1 237 71.7
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 1.5e-93 346.7 236 73.7
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.9e-93 346.3 233 73.4
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 1.9e-93 346.3 236 73.3
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 2.5e-93 345.9 236 72.0
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 4.3e-93 345.1 235 74.0
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 2.8e-92 342.4 229 73.4
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 3.6e-92 342.0 236 70.3
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 8.1e-92 340.9 269 66.9
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.1e-91 340.5 236 71.2
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 1.1e-91 340.5 236 72.0
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 1.4e-91 340.1 237 71.3
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.8e-91 339.7 217 77.0
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 1.8e-91 339.7 227 73.6
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 3.1e-91 339.0 228 73.2
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.1e-91 339.0 229 72.1
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 5.2e-91 338.2 229 73.4
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 1.2e-90 337.0 232 72.4
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 2.0e-90 336.3 261 65.9
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 2.0e-90 336.3 236 70.8
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 4.4e-90 335.1 231 70.6
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 5.8e-90 334.7 208 80.3
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 5.8e-90 334.7 255 66.7
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 7.6e-90 334.3 232 72.4
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 1.7e-89 333.2 222 73.0
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 2.2e-89 332.8 208 79.8
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 3.8e-89 332.0 232 71.6
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 8.4e-89 330.9 235 72.3
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 1.1e-88 330.5 242 73.6
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 3.2e-88 328.9 236 70.8
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 5.4e-88 328.2 226 70.4
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 1.6e-87 326.6 235 67.2
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.8e-87 324.3 290 59.7
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 7.8e-87 324.3 233 70.4
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.0e-86 323.9 213 75.6
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 2.3e-86 322.8 336 54.2
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 2.3e-86 322.8 236 68.2
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 6.6e-86 321.2 279 60.2
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 1.9e-85 319.7 230 67.4
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 1.6e-84 316.6 202 78.2
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 8.1e-84 314.3 236 65.7
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 5.3e-83 311.6 194 77.3
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 9.0e-83 310.8 202 76.7
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 2.0e-82 309.7 213 71.8
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 1.7e-81 306.6 194 76.8
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 3.5e-79 298.9 238 65.1
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 2.5e-77 292.7 201 72.1
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 2.8e-76 289.3 229 67.2
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.8e-76 288.5 167 85.0
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 4.3e-69 265.4 238 56.7
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 7.4e-69 264.6 152 86.2
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 4.0e-67 258.8 176 71.6
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 2.0e-66 256.5 225 55.1
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 4.5e-66 255.4 224 54.9
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 1.3e-65 253.8 171 73.7
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 7.9e-55 218.0 136 76.5
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 5.9e-50 201.8 136 72.1
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 5.9e-50 201.8 136 72.1
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 7.7e-50 201.4 186 52.2
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 3.2e-48 196.1 133 72.9
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 1.2e-47 194.1 225 44.0
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 5.1e-46 188.7 122 76.2
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 1.5e-45 187.2 192 54.2
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 1.5e-45 187.2 131 68.7
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 4.8e-44 182.2 116 79.3
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 6.3e-44 181.8 116 78.4
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 1.8e-43 180.3 125 68.8
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 3.1e-43 179.5 168 56.0
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 4.1e-43 179.1 116 75.9
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 1.0e-38 164.5 115 69.6
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 5.1e-38 162.2 231 42.0
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.2e-31 141.0 124 62.1
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 1.2e-31 141.0 116 62.9
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 8.8e-30 134.8 130 55.4
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.2e-28 130.2 111 63.1
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 2.8e-28 129.8 171 40.9
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 6.3e-28 128.6 85 69.4
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.3e-28 128.6 96 67.7
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 3.8e-25 119.4 239 34.3
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 1.9e-24 117.1 81 71.6
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 1.2e-23 114.4 89 62.9
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 5.2e-22 109.0 106 54.7
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 5.2e-22 109.0 80 65.0
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 8.8e-22 108.2 150 36.0
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.6e-21 106.7 101 60.4
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.4e-19 100.1 67 74.6
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 7.7e-18 95.1 180 31.1
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 9.4e-16 88.2 51 80.4
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.0e-14 84.7 77 61.0
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 9.8e-13 78.2 45 77.8
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 7.0e-11 72.0 159 37.1
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 5.6e-08 62.4 36 80.6
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 5.2e-06 55.8 33 69.7


User provided reference genes

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