Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 0.0e+00 1327.0 660 100.0
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 0.0e+00 1261.5 660 95.0
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 0.0e+00 1196.4 660 90.0
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 0.0e+00 1095.5 660 83.2
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 0.0e+00 1083.6 660 82.9
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 4.1e-311 1070.8 662 81.6
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 4.6e-291 1004.2 660 78.3
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 1.8e-290 1002.3 660 78.2
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 6.7e-290 1000.3 660 77.9
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 8.7e-290 1000.0 660 78.2
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 8.7e-290 1000.0 660 78.2
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 8.7e-290 1000.0 660 78.2
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 3.6e-275 951.4 675 73.0
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 5.0e-253 877.9 668 67.5
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 2.2e-240 835.9 659 68.0
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 1.5e-233 813.1 662 66.6
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 4.1e-215 751.9 678 60.0
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 1.2e-214 750.4 682 58.9
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 7.8e-214 747.7 679 59.2
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 5.6e-212 741.5 677 57.3
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 2.8e-211 739.2 690 58.0
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 3.1e-210 735.7 678 57.5
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 3.8e-208 728.8 675 59.0
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 1.9e-207 726.5 674 57.4
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 3.9e-205 718.8 680 57.5
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 5.1e-205 718.4 668 57.3
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 1.5e-204 716.8 663 56.9
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 4.3e-204 715.3 661 56.7
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 2.8e-203 712.6 707 55.2
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 2.8e-203 712.6 663 56.4
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 1.4e-202 710.3 672 56.0
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 3.1e-202 709.1 669 56.8
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 5.8e-201 704.9 677 55.4
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 1.7e-200 703.4 669 57.2
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 2.2e-200 703.0 674 56.5
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 1.9e-199 699.9 662 56.3
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 5.4e-199 698.4 661 55.8
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 9.3e-199 697.6 697 53.9
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 2.3e-197 693.0 722 53.9
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.1e-196 690.6 675 55.7
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 2.1e-195 686.4 690 53.0
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 6.2e-195 684.9 700 52.4
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 8.1e-195 684.5 667 54.3
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 1.1e-194 684.1 668 54.8
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 1.1e-194 684.1 691 54.1
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.8e-194 683.3 693 54.5
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 4.0e-194 682.2 669 55.6
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 7.6e-193 677.9 670 54.2
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 9.9e-193 677.6 688 55.4
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 4.9e-192 675.2 693 52.4
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 8.4e-192 674.5 678 54.6
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 1.4e-191 673.7 679 54.6
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 1.9e-191 673.3 668 53.0
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 9.3e-191 671.0 675 53.9
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 5.1e-189 665.2 667 55.8
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 6.7e-189 664.8 692 54.0
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.4e-186 656.4 725 51.6
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 5.8e-185 651.7 670 53.3
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 1.0e-184 651.0 674 53.4
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 2.7e-182 642.9 750 48.8
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 2.3e-181 639.8 638 58.8
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 1.5e-180 637.1 667 52.8
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 1.9e-180 636.7 668 52.2
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 3.3e-180 636.0 647 53.3
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 4.3e-180 635.6 843 45.4
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 9.7e-180 634.4 601 57.9
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 2.8e-179 632.9 629 53.6
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 1.5e-177 627.1 673 52.2
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 1.3e-173 614.0 701 49.4
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 2.3e-173 613.2 606 54.6
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 6.3e-171 605.1 669 49.5
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 3.2e-167 592.8 630 53.0
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 5.1e-165 585.5 664 49.7
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 1.8e-162 577.0 601 53.7
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 3.2e-159 566.2 571 53.9
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 5.5e-159 565.5 667 47.8
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 2.0e-156 557.0 668 48.2
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 7.7e-153 545.0 609 50.6
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.7e-152 543.9 664 48.8
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 5.0e-152 542.3 662 47.9
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 1.9e-151 540.4 666 45.3
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 2.5e-151 540.0 660 47.1
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.5e-148 530.8 661 46.0
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 2.0e-148 530.4 580 52.9
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 3.3e-148 529.6 662 46.1
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 3.3e-148 529.6 640 48.1
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 9.7e-148 528.1 659 46.1
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 1.9e-143 513.8 685 44.5
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 1.3e-139 501.1 535 52.0
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 2.4e-138 496.9 569 52.2
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 8.9e-133 478.4 491 52.7
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 8.9e-125 451.8 672 39.7
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.5e-124 451.1 518 47.1
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 1.3e-123 448.0 501 49.5
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 2.2e-123 447.2 587 47.4
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 1.6e-113 414.5 668 38.8
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 6.0e-113 412.5 669 38.7
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 8.6e-112 408.7 542 44.5
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 2.3e-109 400.6 665 37.3
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 7.3e-103 379.0 461 47.5
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 2.4e-98 364.0 763 34.9
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 3.5e-89 333.6 513 40.9
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 3.9e-88 330.1 458 41.9
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 6.9e-85 319.3 225 69.3
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 2.0e-84 317.8 301 58.5
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 1.3e-80 305.1 915 29.2
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 8.7e-80 302.4 555 36.4
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 6.2e-78 296.2 275 56.7
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 4.0e-69 266.9 226 60.6
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 2.1e-65 254.6 228 55.7
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 1.6e-62 245.0 180 71.7
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.3e-59 235.3 171 69.6
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 2.5e-58 231.1 416 36.8
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 5.1e-56 223.4 165 69.7
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 6.7e-56 223.0 310 46.5
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 1.5e-55 221.9 183 62.3
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 6.3e-54 216.5 168 64.3
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 3.8e-51 207.2 146 70.5
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 3.0e-48 197.6 136 72.1
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 1.7e-46 191.8 167 62.3
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 2.2e-43 181.4 174 51.7
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 1.6e-41 175.3 356 35.1
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 6.1e-41 173.3 149 57.7
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 6.7e-40 169.9 727 25.6
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.3e-38 165.6 118 67.8
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 1.3e-38 165.6 175 52.6
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.3e-38 165.6 144 59.0
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.9e-34 151.8 101 70.3
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 4.2e-34 150.6 146 54.1
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 2.2e-30 138.3 329 32.2
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 1.1e-29 136.0 123 48.8
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 3.6e-25 120.9 163 44.8
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 7.5e-23 113.2 272 31.6
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 8.3e-22 109.8 96 53.1
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 1.8e-21 108.6 145 45.5
Sp5g22380 Schrenkiella parvula HOM05D004944 ORTHO05D005989 4.1e-21 107.5 101 55.4
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 2.0e-20 105.1 90 62.2
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 1.7e-19 102.1 179 34.1
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 3.3e-18 97.8 71 66.2
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 7.2e-18 96.7 151 39.7
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 1.4e-16 92.4 54 75.9
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 4.0e-16 90.9 52 80.8
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 5.2e-16 90.5 68 63.2
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 1.2e-12 79.3 156 33.3
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 5.0e-11 73.9 64 50.0
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 1.9e-10 72.0 62 51.6


User provided reference genes

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