Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 8.9e-65 250.0 115 100.0
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 8.9e-65 250.0 115 100.0
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 8.9e-65 250.0 115 100.0
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 2.6e-64 248.4 115 99.1
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 2.6e-64 248.4 115 99.1
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 2.6e-64 248.4 115 99.1
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 5.8e-64 247.3 115 98.3
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 2.2e-63 245.4 115 97.4
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 2.2e-63 245.4 115 97.4
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 2.2e-63 245.4 115 97.4
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 2.2e-63 245.4 115 97.4
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 96.5
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 1.9e-62 242.3 115 94.8
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 2.4e-62 241.9 115 95.7
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 94.8
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 2.7e-61 238.4 115 93.9
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 93.9
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 93.0
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 90.4
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 90.4
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 88.7
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 87.8
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 89.6
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 87.8
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 92.2
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 87.8
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 89.6
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 88.7
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.8
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 88.7
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 87.0
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 87.8
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 87.0
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 87.0
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 87.8
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 87.8
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 86.1
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 87.0
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 87.0
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 87.0
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 87.0
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 87.8
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 87.8
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 87.8
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 87.8
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 86.1
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 2.8e-58 228.4 114 86.0
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 86.1
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 86.1
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 86.1
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 86.1
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 86.1
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 86.1
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 86.1
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 87.0
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 87.8
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 87.8
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 87.8
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 4.7e-58 227.6 105 100.0
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 87.0
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 85.2
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 84.3
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 85.2
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 87.0
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 1.4e-57 226.1 105 99.0
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.8e-57 225.7 114 85.1
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 2.4e-57 225.3 115 84.3
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 2.4e-57 225.3 115 85.2
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 2.4e-57 225.3 115 86.1
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 84.3
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 86.1
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 86.1
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 4.0e-57 224.6 115 86.1
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 4.0e-57 224.6 115 84.3
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 5.2e-57 224.2 115 85.2
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 5.2e-57 224.2 115 85.2
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 6.8e-57 223.8 115 86.1
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 8.9e-57 223.4 115 84.3
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 8.9e-57 223.4 115 84.3
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 1.2e-56 223.0 105 97.1
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 1.2e-56 223.0 115 85.2
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 84.3
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 83.5
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 2.0e-56 222.2 115 82.6
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 4.4e-56 221.1 115 83.5
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 4.4e-56 221.1 115 83.5
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 5.8e-56 220.7 135 75.6
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 7.6e-56 220.3 115 82.6
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 7.6e-56 220.3 115 83.5
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 2.9e-55 218.4 115 82.6
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 3.8e-55 218.0 115 81.7
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 4.9e-55 217.6 115 82.6
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 6.4e-55 217.2 115 82.6
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.1e-54 216.5 134 73.9
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.1e-54 216.5 115 83.5
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 4.2e-54 214.5 113 85.8
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 4.2e-54 214.5 113 85.8
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 6.0e-53 210.7 115 79.1
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 2.3e-52 208.8 112 83.0
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 2.3e-52 208.8 112 83.0
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 6.6e-52 207.2 112 83.0
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 8.7e-52 206.8 112 83.0
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 8.7e-52 206.8 112 83.0
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.5e-51 206.1 115 78.3
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 2.5e-51 205.3 105 84.8
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 3.6e-50 201.4 105 81.9
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 3.6e-50 201.4 105 81.9
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 4.8e-50 201.1 105 85.7
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 8.1e-50 200.3 114 74.6
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 1.4e-49 199.5 115 74.8
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 3.1e-49 198.4 115 78.3
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 9.0e-49 196.8 112 76.8
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 3.4e-48 194.9 128 71.9
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.7e-47 192.6 114 71.9
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 3.8e-47 191.4 98 87.8
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 1.1e-46 189.9 115 68.7
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 2.1e-45 185.7 115 67.8
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 2.7e-45 185.3 115 69.6
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 7.9e-45 183.7 114 69.3
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 1.1e-43 179.9 115 67.0
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.5e-43 178.7 114 68.4
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.3e-42 176.4 115 66.1
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 6.2e-42 174.1 81 98.8
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 8.1e-42 173.7 80 100.0
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 9.0e-41 170.2 80 97.5
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 9.0e-41 170.2 180 51.7
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 7.6e-40 167.2 88 83.0
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 1.1e-38 163.3 88 81.8
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 2.4e-38 162.2 88 81.8
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 2.4e-38 162.2 114 64.0
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 3.2e-38 161.8 115 66.1
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 7.1e-38 160.6 115 56.5
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 2.7e-37 158.7 90 77.8
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 4.6e-37 157.9 80 86.2
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 7.9e-37 157.1 93 73.1
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 1.3e-36 156.4 79 86.1
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 1.3e-36 156.4 84 82.1
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 1.8e-36 156.0 80 86.2
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 3.9e-36 154.8 82 82.9
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.9e-35 152.5 80 80.0
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 3.3e-35 151.8 94 72.3
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 1.4e-33 146.4 80 80.0
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 4.0e-33 144.8 81 77.8
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 5.3e-33 144.4 81 79.0
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 1.5e-32 142.9 84 73.8
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 2.0e-32 142.5 110 58.2
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 2.6e-32 142.1 77 81.8
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 1.1e-27 126.7 111 49.5
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 3.3e-27 125.2 61 93.4
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 2.2e-23 112.5 64 79.7
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 6.1e-21 104.4 114 43.0
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 3.0e-20 102.1 113 45.1
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 3.9e-20 101.7 97 46.4
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 2.5e-19 99.0 71 63.4
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 7.4e-19 97.4 56 73.2
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 1.4e-17 93.2 54 77.8
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 1.8e-17 92.8 113 44.2
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 2.4e-17 92.4 49 83.7
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.5e-16 89.7 116 37.1
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 3.8e-15 85.1 64 53.1
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 2.7e-13 79.0 54 63.0
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 7.9e-13 77.4 105 41.0
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 5.7e-11 71.2 105 35.2
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 5.3e-09 64.7 112 33.9
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.6e-08 62.4 37 73.0
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 3.4e-08 62.0 112 31.2
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 2.2e-07 59.3 113 32.7
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 1.1e-06 57.0 112 28.6
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 1.4e-06 56.6 113 30.1
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 3.2e-06 55.5 88 37.5


User provided reference genes

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