Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.6e-123 444.9 220 100.0
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 6.2e-99 364.4 220 77.7
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 7.6e-97 357.5 220 76.4
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.3e-96 356.7 220 76.4
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 1.7e-96 356.3 220 75.5
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 3.8e-96 355.1 220 76.8
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 2.7e-94 349.0 220 72.3
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 7.9e-94 347.4 220 73.2
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 1.8e-90 336.3 215 72.6
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 6.9e-90 334.3 215 72.1
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 6.9e-90 334.3 215 72.1
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 1.7e-88 329.7 221 70.6
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 2.4e-87 325.9 220 71.4
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.2e-86 323.6 218 69.3
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 3.0e-85 318.9 210 70.5
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 6.7e-85 317.8 216 69.0
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 8.7e-85 317.4 216 70.4
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.1e-84 317.0 220 70.0
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 1.1e-84 317.0 216 66.7
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.1e-84 317.0 215 67.4
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.1e-84 317.0 215 67.4
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 1.5e-84 316.6 218 66.1
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 9.6e-84 313.9 222 64.9
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 2.1e-83 312.8 215 65.6
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 6.2e-83 311.2 222 65.8
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 8.1e-83 310.8 216 65.7
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 8.1e-83 310.8 215 66.5
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 8.1e-83 310.8 215 65.1
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 1.8e-82 309.7 216 65.3
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 1.8e-82 309.7 216 65.7
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.8e-82 309.7 240 63.3
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 3.1e-82 308.9 216 64.8
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 4.0e-82 308.5 216 65.3
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 4.0e-82 308.5 216 65.7
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 5.3e-82 308.1 216 64.8
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 6.9e-82 307.8 216 65.3
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 6.9e-82 307.8 216 65.7
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 9.0e-82 307.4 225 65.3
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 1.2e-81 307.0 217 65.0
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 1.2e-81 307.0 216 64.8
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 1.2e-81 307.0 220 64.5
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 2.6e-81 305.8 212 65.6
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 3.4e-81 305.4 219 63.0
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 3.4e-81 305.4 216 65.3
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 7.6e-81 304.3 216 65.3
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.4e-79 300.1 218 63.3
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 1.9e-79 299.7 217 64.5
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 3.2e-79 298.9 218 62.4
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 1.2e-78 297.0 215 63.3
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 4.6e-78 295.0 219 58.4
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.9e-78 294.3 219 62.6
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 7.9e-78 294.3 219 62.6
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 1.0e-77 293.9 221 63.8
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.8e-77 293.1 219 62.1
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 3.9e-77 292.0 215 63.3
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 6.7e-77 291.2 220 62.3
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 8.7e-77 290.8 213 62.4
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 1.1e-76 290.4 253 56.1
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 1.1e-76 290.4 253 56.1
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 1.9e-76 289.7 216 63.0
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 2.5e-76 289.3 220 64.1
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 2.5e-76 289.3 214 58.4
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 3.3e-76 288.9 235 60.0
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 4.3e-76 288.5 215 58.6
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 5.7e-76 288.1 215 59.5
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 1.3e-75 287.0 221 62.0
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 1.6e-75 286.6 218 59.2
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 2.8e-75 285.8 216 62.0
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 3.7e-75 285.4 221 60.6
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.8e-74 283.1 216 63.0
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 2.4e-74 282.7 250 56.0
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.4e-74 282.7 216 60.6
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 4.1e-74 282.0 216 60.6
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.0e-73 279.6 220 60.5
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 5.9e-73 278.1 220 56.4
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 1.0e-72 277.3 215 60.5
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 3.8e-72 275.4 215 57.7
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 3.8e-72 275.4 217 58.5
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.5e-72 274.6 219 53.9
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 1.1e-71 273.9 258 51.2
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.9e-71 273.1 215 57.2
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 5.5e-71 271.6 215 57.7
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 5.5e-71 271.6 215 57.7
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 5.5e-71 271.6 247 54.3
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.2e-70 270.4 214 57.5
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 1.2e-70 270.4 215 57.2
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 1.2e-70 270.4 215 57.2
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 1.2e-70 270.4 215 57.2
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.7e-70 269.2 211 59.7
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 3.6e-70 268.9 220 54.5
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 3.9e-69 265.4 215 55.8
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 5.1e-69 265.0 215 55.8
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.5e-68 263.5 210 60.0
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 1.5e-68 263.5 217 55.8
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 2.5e-68 262.7 215 56.3
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 2.5e-68 262.7 216 55.1
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 5.7e-68 261.5 217 55.8
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 9.7e-68 260.8 217 55.3
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.8e-67 259.2 194 58.8
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 4.8e-67 258.5 201 57.7
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.0e-66 254.2 215 55.3
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.0e-65 253.1 216 55.1
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.0e-64 250.8 178 62.9
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 7.4e-60 234.6 225 47.6
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.2e-59 233.0 218 53.7
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 6.3e-59 231.5 219 47.0
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-57 227.3 215 50.7
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-57 226.1 185 56.8
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 2.9e-56 222.6 160 63.8
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.8e-56 222.2 170 61.2
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 6.5e-56 221.5 184 56.5
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 8.5e-56 221.1 169 62.1
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 2.5e-55 219.5 216 50.9
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 2.5e-55 219.5 168 61.9
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 7.9e-54 214.5 141 68.1
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.0e-53 214.2 215 45.1
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 6.7e-53 211.5 210 46.7
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.5e-52 210.3 190 54.7
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.7e-52 208.4 221 47.5
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 9.7e-52 207.6 161 59.6
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 9.7e-52 207.6 161 59.6
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.7e-51 205.7 141 66.0
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 4.8e-51 205.3 211 46.4
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.1e-50 204.1 169 56.2
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.8e-50 203.4 210 47.6
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 3.1e-50 202.6 211 46.0
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 7.0e-50 201.4 142 64.8
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 2.5e-47 193.0 208 43.3
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 1.6e-46 190.3 168 53.6
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 2.7e-46 189.5 163 55.2
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 2.7e-46 189.5 159 54.7
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-44 184.1 143 58.7
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.3e-43 180.6 218 39.9
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 1.6e-41 173.7 190 44.2
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.9e-40 169.5 203 45.3
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-39 167.5 166 50.0
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 9.4e-39 164.5 149 55.7
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 4.7e-38 162.2 133 57.1
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 1.7e-35 153.7 127 59.8
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.7e-33 144.8 133 52.6
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 7.7e-33 144.8 126 54.0
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-31 141.0 134 50.0
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 7.2e-31 138.3 123 53.7
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 6.1e-30 135.2 128 53.9
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.0e-28 130.2 114 54.4
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 4.4e-28 129.0 104 54.8
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.3e-24 117.5 102 53.9
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.2e-20 104.4 91 56.0
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.0e-20 103.6 71 70.4
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 8.3e-19 98.2 66 65.2
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-18 97.4 143 37.1
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 6.6e-16 88.6 63 60.3
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.2e-14 84.3 78 52.6
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 6.8e-13 78.6 82 52.4
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 1.2e-12 77.8 50 62.0
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.7e-11 73.9 76 43.4
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 1.4e-10 70.9 55 65.5
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 1.4e-10 70.9 55 65.5
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 7.0e-10 68.6 54 64.8
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 7.0e-10 68.6 162 25.9
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.0e-08 62.4 106 35.8
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 2.1e-06 57.0 97 35.1


User provided reference genes

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