Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 1.0e-102 376.7 183 100.0
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 2.7e-92 342.0 183 91.8
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 1.0e-83 313.5 185 83.8
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.4e-72 276.6 183 75.4
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 4.9e-65 251.5 187 72.2
CARHR155230 Cardamine hirsuta HOM05D004190 ORTHO05D004692 6.4e-65 251.1 182 69.2
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 1.4e-64 250.0 180 69.4
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 7.0e-64 247.7 180 68.9
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 7.0e-64 247.7 180 68.9
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 6.0e-63 244.6 180 67.8
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 2.1e-55 219.5 178 63.5
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 3.5e-55 218.8 179 61.5
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 9.5e-53 210.7 197 58.4
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 9.5e-53 210.7 184 59.2
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 4.0e-51 205.3 179 56.4
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 1.3e-49 200.3 181 57.5
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 1.9e-48 196.4 177 55.9
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 4.1e-48 195.3 179 54.2
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 2.1e-47 193.0 169 58.6
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.7e-46 189.9 182 54.9
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 3.9e-46 188.7 182 53.3
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 3.9e-46 188.7 182 53.3
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 3.9e-46 188.7 182 53.3
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 5.1e-46 188.3 179 53.6
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 8.7e-46 187.6 176 54.5
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 1.5e-45 186.8 179 53.1
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 1.9e-45 186.4 176 54.0
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 1.9e-45 186.4 176 54.0
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 1.9e-45 186.4 181 53.0
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 9.6e-45 184.1 175 54.9
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 2.1e-44 183.0 171 53.2
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 3.1e-43 179.1 179 53.6
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 6.9e-43 177.9 180 51.7
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 1.2e-42 177.2 179 51.4
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 2.0e-42 176.4 184 51.1
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 4.9e-41 171.8 180 50.6
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 1.9e-40 169.9 184 49.5
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 2.6e-34 149.4 184 46.2
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 4.5e-34 148.7 178 43.8
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 7.6e-34 147.9 183 43.2
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.3e-33 147.1 183 42.6
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.2e-33 146.4 183 42.6
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.9e-33 146.0 170 46.5
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 3.8e-33 145.6 190 43.7
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 3.8e-33 145.6 170 46.5
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 4.9e-33 145.2 177 47.5
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.4e-32 142.9 170 45.9
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 5.4e-32 141.7 170 44.1
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 2.1e-31 139.8 172 41.9
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.1e-31 139.8 156 44.9
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 6.0e-31 138.3 156 44.2
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 1.8e-30 136.7 142 49.3
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.3e-30 136.3 156 44.2
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.3e-30 136.3 156 43.6
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 2.3e-30 136.3 163 45.4
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 5.1e-30 135.2 175 44.6
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 6.7e-30 134.8 156 42.9
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 3.3e-29 132.5 181 42.0
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 5.6e-29 131.7 184 41.8
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 7.4e-29 131.3 161 44.1
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 9.6e-29 131.0 167 41.3
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 8.1e-28 127.9 181 42.5
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 1.1e-27 127.5 152 43.4
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.4e-27 127.1 184 43.5
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 9.0e-27 124.4 168 42.3
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 1.5e-26 123.6 158 42.4
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 2.0e-26 123.2 174 39.7
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 2.6e-26 122.9 177 40.7
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 2.6e-26 122.9 174 41.4
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 8.4e-25 117.9 165 38.8
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 1.4e-24 117.1 178 38.2
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 2.4e-24 116.3 157 42.0
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 7.1e-24 114.8 152 41.4
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.6e-23 113.6 147 41.5
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 2.1e-23 113.2 181 37.0
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 2.1e-23 113.2 182 38.5
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 2.7e-23 112.8 169 39.6
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 6.0e-23 111.7 145 40.7
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 1.0e-22 110.9 137 42.3
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 3.0e-22 109.4 198 38.9
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 3.9e-22 109.0 185 37.8
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 1.9e-21 106.7 142 40.1
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 1.9e-21 106.7 142 40.1
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 2.5e-21 106.3 143 40.6
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 2.5e-21 106.3 207 33.8
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 3.3e-21 105.9 177 42.4
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 3.3e-21 105.9 140 40.0
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 4.3e-21 105.5 157 42.0
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 4.3e-21 105.5 146 38.4
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 7.4e-21 104.8 141 39.0
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 7.4e-21 104.8 175 38.9
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 2.8e-20 102.8 178 38.8
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 6.2e-20 101.7 141 39.7
Aa31LG8G9210 Aethionema arabicum HOM05D004190 ORTHO05D004692 2.4e-19 99.8 171 37.4
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 2.4e-19 99.8 177 37.9
QL01p031797 Quercus lobata HOM05D004190 ORTHO05D004692 5.3e-19 98.6 125 41.6
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 6.9e-19 98.2 171 33.9
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 6.9e-19 98.2 148 36.5
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 2.6e-18 96.3 131 39.7
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 2.6e-18 96.3 131 39.7
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 3.4e-18 95.9 173 36.4
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 5.8e-18 95.1 193 31.6
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 1.0e-17 94.4 147 34.7
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 1.7e-17 93.6 162 36.4
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 1.7e-17 93.6 174 35.6
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 4.9e-17 92.0 84 57.1
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 8.4e-17 91.3 203 31.5
Haze_12048 Corylus avellana HOM05D004190 ORTHO05D004692 1.4e-16 90.5 269 26.8
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.4e-16 90.5 148 35.1
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 1.9e-16 90.1 149 36.9
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 2.5e-16 89.7 137 36.5
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 2.5e-16 89.7 145 34.5
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 3.5e-15 85.9 176 33.5
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 6.7e-14 81.6 95 47.4
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 1.1e-13 80.9 177 32.8
MELO3C020629.2 Cucumis melo HOM05D004190 ORTHO05D004692 2.5e-13 79.7 161 32.9
CSS0021452 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 3.3e-13 79.3 113 37.2
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 4.3e-13 79.0 142 33.1
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 4.3e-13 79.0 134 38.1
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 9.7e-13 77.8 139 35.3
A01p26200 Brassica napus HOM05D004190 ORTHO05D004692 2.8e-12 76.3 58 69.0
Aqoxy4G00226 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 4.8e-12 75.5 169 29.6
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 3.1e-11 72.8 139 33.1
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 3.1e-11 72.8 102 41.2
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 4.1e-11 72.4 122 36.9
CAN.G1733.1 Capsicum annuum HOM05D004190 ORTHO05D004692 6.9e-11 71.6 173 29.5
Gorai.001G110900 Gossypium raimondii HOM05D004190 ORTHO05D004692 6.9e-11 71.6 94 45.7
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 6.9e-11 71.6 139 28.8
FvH4_6g13651 Fragaria vesca HOM05D022761 ORTHO05D022494 1.5e-10 70.5 164 29.3
SEGI_27640 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 1.5e-10 70.5 120 35.0
Gohir.D07G103000 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.0e-10 70.1 94 44.7
Oeu002348.1 Olea europaea HOM05D004190 ORTHO05D004692 2.0e-10 70.1 115 35.7
BolC3t13826H Brassica oleracea HOM05D000021 ORTHO05D000010 2.6e-10 69.7 65 50.8
C03p13770 Brassica napus HOM05D000021 ORTHO05D000010 4.5e-10 68.9 65 50.8
FAN09G4791 Fragaria x ananassa HOM05D004190 ORTHO05D022494 4.5e-10 68.9 164 28.7
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 4.5e-10 68.9 70 47.1
FAN14G3185 Fragaria x ananassa HOM05D022761 ORTHO05D022494 5.9e-10 68.6 164 28.7
CAN.G1733.2 Capsicum annuum HOM05D004190 ORTHO05D004692 7.7e-10 68.2 127 30.7
SEGI_27595 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 7.7e-10 68.2 127 31.5
SEGI_38205 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 7.7e-10 68.2 124 33.1
CAN.G745.27 Capsicum annuum HOM05D004190 ORTHO05D004692 1.7e-09 67.0 116 33.6
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.7e-09 67.0 114 35.1
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 6.5e-09 65.1 194 28.4
unitig_8.g3659 Utricularia gibba HOM05D004190 ORTHO05D004692 1.9e-08 63.5 70 42.9
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 2.5e-08 63.2 144 34.0
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 3.2e-08 62.8 144 31.9
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 4.2e-08 62.4 128 36.7
SGA_v2.0_scaffold295G47507 Striga asiatica HOM05D004190 ORTHO05D004692 4.2e-08 62.4 88 42.0
A02p07130 Brassica napus HOM05D004190 ORTHO05D004692 9.4e-08 61.2 65 50.8
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 9.4e-08 61.2 101 38.6
Sopen00g012630 Solanum pennellii HOM05D004190 ORTHO05D004692 1.2e-07 60.8 61 42.6
Sopen01g043570 Solanum pennellii HOM05D004190 ORTHO05D004692 1.2e-07 60.8 61 42.6
PGSC0003DMG400006228 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.6e-07 60.5 91 37.4
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 2.7e-07 59.7 113 36.3
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 2.7e-07 59.7 113 36.3
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 4.6e-07 58.9 52 51.9
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 4.6e-07 58.9 169 27.2
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 1.0e-06 57.8 141 31.2
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 1.0e-06 57.8 145 30.3
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 1.4e-06 57.4 72 45.8
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 1.4e-06 57.4 141 34.8
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 1.4e-06 57.4 195 25.1
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 2.3e-06 56.6 154 26.0
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 3.9e-06 55.8 123 33.3
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 3.9e-06 55.8 58 48.3
Glyma.16G194400 Glycine max HOM05D003520 ORTHO05D003332 5.1e-06 55.5 65 43.1
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 5.1e-06 55.5 139 34.5
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 5.1e-06 55.5 107 34.6
PSO384G2347 Papaver somniferum HOM05D066734 ORTHO05D004692 8.8e-06 54.7 65 46.2
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 8.8e-06 54.7 137 28.5
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 8.8e-06 54.7 140 30.7
SGA_v2.0_scaffold177G39450 Striga asiatica HOM05D004190 ORTHO05D004692 8.8e-06 54.7 122 33.6


User provided reference genes

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