Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G23100 Arabidopsis thaliana HOM05D006635 ORTHO05D008047 5.3e-137 491.1 265 100.0
AL3G37550 Arabidopsis lyrata HOM05D006635 ORTHO05D008047 8.5e-119 430.6 249 90.4
CARHR099010 Cardamine hirsuta HOM05D006635 ORTHO05D008047 5.7e-115 417.9 247 87.4
Carub.0003s2327 Capsella rubella HOM05D006635 ORTHO05D008047 2.4e-113 412.5 247 85.8
Sp3g20780 Schrenkiella parvula HOM05D006635 ORTHO05D008047 5.2e-108 394.8 250 82.8
BcaC09g49245 Brassica carinata HOM05D006635 ORTHO05D008047 4.4e-107 391.7 251 81.3
A01p31980 Brassica napus HOM05D006635 ORTHO05D008047 4.1e-97 358.6 255 77.3
BraA01t03324Z Brassica rapa HOM05D006635 ORTHO05D008047 4.1e-97 358.6 255 77.3
BcaB04g20471 Brassica carinata HOM05D006635 ORTHO05D008047 9.1e-97 357.5 255 74.9
Thhalv10022194m.g Eutrema salsugineum HOM05D006635 ORTHO05D008047 6.6e-95 351.3 251 75.3
THA.LOC104808600 Tarenaya hassleriana HOM05D006635 ORTHO05D008047 4.2e-94 348.6 257 70.0
BolC1t04048H Brassica oleracea HOM05D006635 ORTHO05D008047 6.3e-90 334.7 179 88.8
Haze_11307 Corylus avellana HOM05D006635 ORTHO05D008047 8.3e-82 307.8 255 61.6
Ciclev10005690m.g Citrus clementina HOM05D006635 ORTHO05D008047 1.4e-81 307.0 257 63.0
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 4.1e-81 305.4 226 66.4
Ciclev10005689m.g Citrus clementina HOM05D006635 ORTHO05D008047 4.1e-81 305.4 257 62.3
Haze_11310 Corylus avellana HOM05D006635 ORTHO05D008047 9.2e-81 304.3 255 60.8
Aa31LG8G9580 Aethionema arabicum HOM05D006635 ORTHO05D008047 6.0e-80 301.6 277 61.7
COL.COLO4_15799 Corchorus olitorius HOM05D006635 ORTHO05D008047 3.0e-79 299.3 230 65.2
Gorai.011G171700 Gossypium raimondii HOM05D006635 ORTHO05D008047 3.0e-79 299.3 262 61.1
Gohir.D10G153800 Gossypium hirsutum HOM05D006635 ORTHO05D008047 3.9e-79 298.9 270 60.0
Manes.15G037200 Manihot esculenta HOM05D006635 ORTHO05D008047 3.9e-79 298.9 251 63.7
Gohir.A10G113600 Gossypium hirsutum HOM05D006635 ORTHO05D008047 5.0e-79 298.5 262 60.7
CANSAT78G1035 Cannabis sativa HOM05D006635 ORTHO05D008047 6.6e-79 298.1 253 62.1
Cpa.g.sc58.53 Carica papaya HOM05D006635 ORTHO05D008047 8.6e-79 297.7 221 67.9
Thecc.04G246700 Theobroma cacao HOM05D006635 ORTHO05D008047 2.5e-78 296.2 260 61.5
CiPaw.01G189900 Carya illinoinensis HOM05D006635 ORTHO05D008047 5.6e-78 295.0 252 60.7
Potri.010G075900 Populus trichocarpa HOM05D006635 ORTHO05D008047 9.5e-78 294.3 228 66.7
Eucgr.H03153 Eucalyptus grandis HOM05D006635 ORTHO05D008047 1.2e-77 293.9 261 60.2
CSS0008878 Camellia sinensis var. sinensis HOM05D006635 ORTHO05D008047 2.8e-77 292.7 234 65.0
Prupe.1G031500 Prunus persica HOM05D006635 ORTHO05D008047 4.7e-77 292.0 257 59.9
Atru.chr4.2211 Acer truncatum HOM05D006635 ORTHO05D008047 3.1e-76 289.3 256 56.6
Ciclev10007171m.g Citrus clementina HOM05D006635 ORTHO05D008047 3.1e-76 289.3 242 62.4
TWI53G1330 Tripterygium wilfordii HOM05D006635 ORTHO05D008047 3.1e-76 289.3 260 60.0
TWI53G1448 Tripterygium wilfordii HOM05D006635 ORTHO05D008047 3.1e-76 289.3 260 60.0
PGSC0003DMG400016282 Solanum tuberosum HOM05D006635 ORTHO05D008047 1.2e-75 287.3 227 65.2
Migut.G00439 Erythranthe guttata HOM05D006635 ORTHO05D008047 4.4e-75 285.4 254 59.8
RcHm_v2.0_Chr1g0323991 Rosa chinensis HOM05D006635 ORTHO05D008047 4.4e-75 285.4 247 59.1
Hma1.2p1_0650F.1_g195460 Hydrangea macrophylla HOM05D006635 ORTHO05D008047 5.8e-75 285.0 233 62.2
Sopen06g018890 Solanum pennellii HOM05D006635 ORTHO05D008047 7.5e-75 284.6 227 65.6
DCAR_027282 Daucus carota HOM05D006635 ORTHO05D008047 9.8e-75 284.3 228 62.7
MD13G1208000 Malus domestica HOM05D006635 ORTHO05D008047 9.8e-75 284.3 260 56.9
Solyc06g053770.4 Solanum lycopersicum HOM05D006635 ORTHO05D008047 9.8e-75 284.3 227 65.6
Cc03_g04920 Coffea canephora HOM05D006635 ORTHO05D008047 1.7e-74 283.5 232 63.4
Aqoxy5G00314 Aquilegia oxysepala HOM05D006635 ORTHO05D008047 3.7e-74 282.3 234 61.5
Sc19g0003750 Simmondsia chinensis HOM05D006635 ORTHO05D008047 3.7e-74 282.3 266 56.4
Sed0017322 Sechium edule HOM05D006635 ORTHO05D008047 1.4e-73 280.4 224 62.1
Sc19g0005210 Simmondsia chinensis HOM05D006635 ORTHO05D008047 1.4e-73 280.4 266 56.0
GSVIVG01018125001 Vitis vinifera HOM05D006635 ORTHO05D008047 2.4e-73 279.6 252 59.9
FvH4_2g07190 Fragaria vesca HOM05D006635 ORTHO05D008047 3.2e-73 279.3 247 57.1
FAN24G3344 Fragaria x ananassa HOM05D006635 ORTHO05D008047 4.1e-73 278.9 247 57.1
Actinidia08441 Actinidia chinensis HOM05D006635 ORTHO05D008047 7.0e-73 278.1 234 62.0
MSTRG.4101 Avicennia marina HOM05D006635 ORTHO05D008047 2.1e-72 276.6 208 66.8
HanXRQChr13g0424511 Helianthus annuus HOM05D006635 ORTHO05D008047 2.7e-72 276.2 241 58.9
Nitab4.5_0000302g0050 Nicotiana tabacum HOM05D006635 ORTHO05D008047 3.5e-72 275.8 232 63.4
Nitab4.5_0008721g0010 Nicotiana tabacum HOM05D006635 ORTHO05D008047 3.5e-72 275.8 197 69.5
Ca_09839_v3 Cicer arietinum L. HOM05D006635 ORTHO05D008047 6.0e-72 275.0 247 56.7
ClCG09G015590 Citrullus lanatus HOM05D006635 ORTHO05D008047 1.0e-71 274.2 245 59.6
Dinv29905 Davidia involucrata HOM05D006635 ORTHO05D008047 1.7e-71 273.5 213 62.9
CsaV3_7G006710 Cucumis sativus L. HOM05D006635 ORTHO05D008047 2.3e-71 273.1 229 61.1
CAN.G118.6 Capsicum annuum HOM05D006635 ORTHO05D008047 3.0e-71 272.7 227 62.1
Medtr1g075330 Medicago truncatula HOM05D006635 ORTHO05D008047 3.9e-71 272.3 247 56.3
FAN20G2319 Fragaria x ananassa HOM05D006635 ORTHO05D008047 5.1e-71 271.9 247 55.5
Lj6A657T45 Lonicera japonica HOM05D006635 ORTHO05D008047 1.9e-70 270.0 222 61.7
arahy.Tifrunner.gnm1.ann1.20YP49 Arachis hypogaea HOM05D006635 ORTHO05D008047 4.3e-70 268.9 227 60.4
Lj5g0017333 Lotus japonicus HOM05D006635 ORTHO05D008047 4.3e-70 268.9 257 56.8
arahy.Tifrunner.gnm1.ann1.P8HXAC Arachis hypogaea HOM05D006635 ORTHO05D008047 5.6e-70 268.5 227 60.4
Psat4g107880 Pisum sativum HOM05D006635 ORTHO05D008047 7.3e-70 268.1 226 61.5
ECA240G1129 Erigeron canadensis HOM05D000856 ORTHO05D002253 1.2e-69 267.3 218 61.9
MELO3C018624.2 Cucumis melo HOM05D006635 ORTHO05D008047 2.8e-69 266.2 235 59.6
C01p40990 Brassica napus HOM05D006635 ORTHO05D008047 3.6e-69 265.8 138 89.9
Nn1g02620 Nelumbo nucifera HOM05D006635 ORTHO05D008047 3.6e-69 265.8 274 54.4
Lalb_Chr02g0150381 Lupinus albus HOM05D006635 ORTHO05D008047 6.2e-69 265.0 264 53.8
HPP92_023529 Vanilla planifolia HOM05D006635 ORTHO05D008047 1.1e-68 264.2 231 57.6
AUR62002251 Chenopodium quinoa HOM05D006635 ORTHO05D008047 1.8e-68 263.5 237 57.0
PSO832G2723 Papaver somniferum HOM05D006635 ORTHO05D008047 1.8e-68 263.5 227 59.5
PGR004G0241 Punica granatum HOM05D006635 ORTHO05D008047 4.0e-68 262.3 255 52.9
PSO210G4915 Papaver somniferum HOM05D006635 ORTHO05D008047 3.4e-67 259.2 227 58.1
Oeu058885.1 Olea europaea HOM05D006635 ORTHO05D008047 3.7e-66 255.8 252 55.2
vmacro15410 Vaccinium macrocarpon HOM05D006635 ORTHO05D008047 6.4e-66 255.0 280 52.9
ATR0824G049 Amborella trichopoda HOM05D006635 ORTHO05D008047 8.3e-66 254.6 231 55.8
FAN27G3431 Fragaria x ananassa HOM05D006635 ORTHO05D008047 8.3e-66 254.6 288 50.0
Duzib151G0047 Durio zibethinus HOM05D006635 ORTHO05D008047 1.6e-64 250.4 256 55.9
Ah.13g066120 Amaranthus hybridus HOM05D006635 ORTHO05D008047 2.1e-64 250.0 229 55.5
Os03g0740800 Oryza sativa ssp. japonica HOM05D006635 ORTHO05D008047 3.5e-64 249.2 229 53.7
CDE04G0173 Ceratophyllum demersum HOM05D006635 ORTHO05D008047 5.1e-63 245.4 225 55.6
Glyma.20G205600 Glycine max HOM05D006635 ORTHO05D008047 1.5e-62 243.8 239 54.4
Glyma.10G184800 Glycine max HOM05D006635 ORTHO05D008047 2.5e-62 243.0 240 53.3
QL06p015844 Quercus lobata HOM05D006635 ORTHO05D008047 7.3e-62 241.5 348 42.8
Hund11856 Selenicereus undatus HOM05D006635 ORTHO05D008047 7.3e-62 241.5 258 53.1
EL10Ac3g05891 Beta vulgaris HOM05D006635 ORTHO05D008047 2.1e-61 240.0 232 55.2
Zm00001eb056730 Zea mays HOM05D006635 ORTHO05D008047 4.7e-61 238.8 240 52.1
Phvul.007G125600 Phaseolus vulgaris HOM05D006635 ORTHO05D008047 2.6e-59 233.0 252 50.8
Peaxi162Scf00325g00713 Petunia axillaris HOM05D006635 ORTHO05D008047 6.4e-58 228.4 234 56.4
VMungo0720G1578 Vigna mungo HOM05D006635 ORTHO05D008047 3.2e-57 226.1 232 53.9
CSS0031458 Camellia sinensis var. sinensis HOM05D006635 ORTHO05D008047 7.1e-57 224.9 260 50.0
Lsat_1_v5_gn_3_122920 Lactuca sativa HOM05D006635 ORTHO05D008047 1.2e-56 224.2 221 56.1
Sabra10G0032800 Salix brachista HOM05D006635 ORTHO05D008047 3.6e-53 212.6 421 35.6
MBI19_g38372_MAGBIO Magnolia biondii HOM05D006635 ORTHO05D008047 1.3e-47 194.1 228 48.7
AT1G61410 Arabidopsis thaliana HOM05D006635 ORTHO05D008047 6.2e-45 185.3 119 87.4
PGR004G0922 Punica granatum HOM05D006635 ORTHO05D008047 5.8e-43 178.7 158 53.2
Mapoly0014s0074 Marchantia polymorpha HOM05D006635 ORTHO05D008047 3.0e-39 166.4 233 40.8
PGR102G1543 Punica granatum HOM05D006635 ORTHO05D008047 4.3e-38 162.5 255 39.2
AagrBONN_evm.TU.Sc2ySwM_228.5661 Anthoceros agrestis HOM05D006635 ORTHO05D008047 3.7e-29 132.9 221 34.8
TPR.G27195 Trifolium pratense HOM05D006635 ORTHO05D008047 1.4e-28 131.0 92 60.9
AUR62015462 Chenopodium quinoa HOM05D006635 ORTHO05D008047 4.0e-28 129.4 151 49.7
Ciclev10029925m.g Citrus clementina HOM05D006635 ORTHO05D008047 1.5e-27 127.5 133 49.6
TAR636G2119 Trochodendron aralioides HOM05D006635 ORTHO05D008047 2.0e-27 127.1 162 46.9
PGR083G1020 Punica granatum HOM05D006635 ORTHO05D008047 3.4e-27 126.3 258 36.8
Thhalv10021924m.g Eutrema salsugineum HOM05D006635 ORTHO05D008047 4.5e-27 125.9 79 83.5
C01p40960 Brassica napus HOM05D006635 ORTHO05D008047 2.2e-21 107.1 95 66.3
C01p40970 Brassica napus HOM05D006635 ORTHO05D008047 2.2e-21 107.1 56 85.7
Pp3c14_21160 Physcomitrium patens HOM05D006635 ORTHO05D008047 4.5e-19 99.4 226 29.6
Pp3c1_38430 Physcomitrium patens HOM05D006635 ORTHO05D008047 1.3e-18 97.8 230 29.1
SEGI_11171 Sequoiadendron giganteum HOM05D006635 ORTHO05D008047 7.2e-17 92.0 88 51.1
TAR636G0517 Trochodendron aralioides HOM05D006635 ORTHO05D008047 2.1e-16 90.5 92 58.7
MBI19_g44428_MAGBIO Magnolia biondii HOM05D006635 ORTHO05D008047 4.6e-16 89.4 131 41.2
CBR_g33918 Chara braunii HOM05D006635 ORTHO05D008047 3.9e-15 86.3 168 35.1
SEGI_02340 Sequoiadendron giganteum HOM05D006635 ORTHO05D008047 1.5e-14 84.3 90 56.7
Oeu058884.1 Olea europaea HOM05D001680 ORTHO05D001596 1.7e-10 70.9 96 45.8
Pp3c13_7410 Physcomitrium patens HOM05D000160 ORTHO05D000496 8.5e-10 68.6 167 31.1
Pp3c3_5070 Physcomitrium patens HOM05D000160 ORTHO05D000496 9.4e-09 65.1 167 26.3
BcaC05g27974 Brassica carinata HOM05D006635 ORTHO05D008047 1.2e-08 64.7 50 68.0
unitig_747.g21677 Utricularia gibba HOM05D006635 ORTHO05D008047 4.4e-06 56.2 51 51.0


User provided reference genes

Program Settings