Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1625.5 798 100.0
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1595.1 798 97.7
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1511.9 797 91.7
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1505.0 798 91.9
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1498.8 797 91.3
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1498.4 797 90.3
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1498.0 797 90.5
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1497.6 797 90.7
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1495.7 797 90.5
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1492.2 797 90.2
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1490.7 797 90.2
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1487.2 797 90.2
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1485.7 797 90.1
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1485.7 797 90.2
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1485.7 797 90.2
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1479.2 797 90.0
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1468.0 799 89.5
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1454.1 756 94.6
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1402.1 853 81.1
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1366.7 810 81.1
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1315.4 805 78.5
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1313.1 807 78.6
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1304.7 804 78.4
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1303.1 807 78.3
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1301.2 807 78.3
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1301.2 816 77.1
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1300.0 805 78.6
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1299.6 811 77.4
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1299.3 805 77.1
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1299.3 807 78.3
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1297.7 807 78.3
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1296.2 806 77.2
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1295.0 806 77.5
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1294.6 805 78.5
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1285.4 808 75.7
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1285.0 806 76.2
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1284.2 807 76.7
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1284.2 809 76.9
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1283.9 805 76.9
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1282.7 807 76.1
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1280.0 804 77.9
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1280.0 805 76.6
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1279.2 805 76.8
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1278.5 806 76.3
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1278.5 805 77.3
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1276.9 805 76.1
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1276.5 805 76.4
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1272.3 805 76.0
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1271.9 807 75.7
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1271.5 804 76.9
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1271.5 806 75.7
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1269.6 799 76.3
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1269.2 810 76.0
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1268.8 804 75.2
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1268.4 808 76.5
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1268.1 810 75.8
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1267.7 806 75.8
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1265.8 810 75.6
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1265.4 804 76.7
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1264.6 803 76.5
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1263.1 806 75.2
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1262.7 810 75.8
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1262.3 807 75.1
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1261.1 806 75.1
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1260.4 804 76.0
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1250.3 805 75.0
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1250.0 810 74.4
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1242.6 798 74.7
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1238.4 805 75.0
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1233.4 804 75.2
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1233.0 811 74.2
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1233.0 803 73.3
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1230.7 794 74.7
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1227.2 799 74.5
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1222.6 883 68.2
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1218.0 829 72.7
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1216.8 810 73.3
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1213.7 806 72.6
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1211.4 806 73.3
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1207.2 809 71.9
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1204.5 800 72.2
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1204.1 803 72.4
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1201.0 806 72.3
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1200.7 803 72.6
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1200.7 803 72.1
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1193.7 801 71.7
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1192.2 803 71.6
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1187.2 804 71.6
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1177.9 803 70.2
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1175.2 805 73.3
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1172.9 803 72.0
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1172.5 867 67.2
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1171.4 808 69.9
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1168.7 858 66.8
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1168.7 804 69.9
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1167.9 785 73.1
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1166.0 804 69.3
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1165.2 801 70.2
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1161.4 803 69.6
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1155.6 806 69.7
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1150.6 799 70.6
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1138.3 819 68.5
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1129.0 910 63.3
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1119.8 810 68.9
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1114.0 776 70.6
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1100.5 963 59.7
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1094.7 961 59.7
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1087.8 801 66.8
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1082.0 813 65.7
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.1e-311 1072.8 821 64.3
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 3.5e-301 1038.1 804 64.8
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 9.6e-291 1003.4 796 61.9
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 2.6e-288 995.3 811 63.4
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 8.1e-274 947.2 803 60.3
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 9.9e-272 940.3 606 75.1
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 9.7e-235 817.4 775 56.8
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 7.0e-193 678.3 854 45.2
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 2.1e-181 640.2 381 79.3
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 4.8e-165 585.9 830 40.2
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 2.9e-154 550.1 801 41.8
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 7.4e-150 535.4 941 34.5
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 4.6e-144 516.2 842 37.6
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 6.1e-120 436.0 419 55.8
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 1.6e-112 411.4 316 63.3
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.5e-105 387.5 244 73.0
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 6.6e-98 362.8 345 58.8
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 7.8e-91 339.3 236 72.5
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 1.1e-71 275.8 195 68.2
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 7.8e-67 259.6 173 75.7
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 2.4e-52 211.5 665 28.1
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 4.3e-49 200.7 141 73.8
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 4.8e-48 197.2 185 61.1
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 2.4e-39 168.3 90 83.3
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 3.0e-34 151.4 267 39.3
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 3.9e-34 151.0 133 52.6
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 6.2e-32 143.7 104 62.5
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 8.2e-32 143.3 99 63.6
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 7.6e-30 136.7 100 70.0
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 2.9e-29 134.8 190 43.7
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 8.4e-29 133.3 175 44.6
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 1.4e-28 132.5 120 59.2
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.5e-28 130.6 80 80.0
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 1.6e-27 129.0 118 56.8
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 4.6e-27 127.5 113 50.4
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 3.1e-23 114.8 257 30.7
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 4.1e-23 114.4 114 54.4
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 5.9e-22 110.5 168 40.5
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 9.4e-20 103.2 69 71.0
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.0e-18 99.8 50 86.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 2.4e-15 88.6 73 63.0
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 3.1e-15 88.2 43 88.4
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.2e-14 86.3 143 44.1
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 5.9e-14 84.0 56 71.4
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 1.9e-12 79.0 60 53.3
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 2.1e-11 75.5 129 38.0
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 7.9e-11 73.6 460 21.7
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 8.8e-10 70.1 69 53.6
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 9.7e-09 66.6 57 57.9
BcaC02g07665 Brassica carinata HOM05D001091 ORTHO05D001020 1.1e-07 63.2 287 22.6
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 2.4e-07 62.0 69 58.0
BolC4t27959H Brassica oleracea HOM05D001091 ORTHO05D001020 4.1e-07 61.2 339 22.7
BcaC02g07664 Brassica carinata HOM05D001091 ORTHO05D001020 1.2e-06 59.7 357 22.1
C04p64820 Brassica napus HOM05D001091 ORTHO05D001020 2.0e-06 58.9 339 22.7
C04p64810 Brassica napus HOM05D001091 ORTHO05D001020 3.5e-06 58.2 286 21.7


User provided reference genes

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