Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 2169.4 1078 100.0
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 2072.0 1076 94.8
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 2032.3 1076 93.1
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 2030.4 1039 96.7
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1989.5 1076 91.1
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1977.6 1076 90.8
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1968.7 1076 90.4
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1968.0 1076 90.4
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1957.6 1076 90.1
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1957.2 1087 90.1
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1953.7 1089 89.5
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1941.0 1114 87.1
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1936.0 1077 89.0
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1875.5 1081 85.4
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1629.8 1089 74.1
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1601.3 1089 73.6
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1595.1 1078 76.7
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 1581.6 1102 72.0
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1580.1 1088 72.6
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 1575.8 1099 72.5
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1574.7 1090 71.9
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1574.3 1089 73.3
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1570.8 1097 71.6
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1570.4 1085 72.3
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1568.9 1087 72.1
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1568.9 1085 70.6
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1563.9 1092 72.2
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1563.5 1091 71.5
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1542.7 1088 71.7
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1541.2 1117 69.7
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1538.9 1114 69.7
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1520.8 1094 70.4
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1515.0 1083 71.6
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1504.6 981 75.6
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 1504.2 1083 71.3
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1493.4 1087 68.4
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1492.2 1085 70.0
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1489.9 1090 68.4
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1485.7 1078 70.3
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1478.4 1094 68.2
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1473.4 1087 68.5
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1465.7 1135 67.0
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1459.9 1097 69.2
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 1452.6 1102 67.3
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1451.8 1114 65.2
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1449.1 1132 65.3
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 1446.0 1093 67.6
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1439.9 1020 69.6
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 1438.3 1100 66.2
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1431.4 1096 67.1
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1431.4 1142 64.3
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1428.3 1080 66.7
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1427.9 1116 64.9
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1425.2 1082 66.8
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1424.1 1085 67.6
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1422.1 1074 67.5
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1421.0 1089 65.8
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1416.4 1082 66.1
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1414.1 1081 66.0
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1413.3 1125 64.4
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1412.5 1090 65.2
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1407.5 1087 65.7
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 1406.3 1191 63.4
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1400.2 1083 65.7
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1398.3 1078 67.4
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 0.0e+00 1397.9 1095 64.8
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1394.0 1081 65.5
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1387.1 1085 64.6
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1382.1 1085 64.3
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1379.8 1092 63.7
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 0.0e+00 1373.2 1080 65.6
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1366.3 1106 63.3
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 0.0e+00 1364.4 1082 64.0
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 0.0e+00 1355.1 871 75.4
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1352.4 1094 64.1
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 0.0e+00 1346.3 1210 58.6
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 0.0e+00 1339.7 872 74.8
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 0.0e+00 1330.1 1169 60.3
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1314.3 1087 61.9
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 0.0e+00 1307.0 1083 60.9
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 0.0e+00 1294.3 891 71.2
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 0.0e+00 1284.2 871 71.9
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1279.2 859 71.8
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 0.0e+00 1264.6 822 76.0
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 0.0e+00 1255.0 848 72.1
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 0.0e+00 1254.6 1091 59.9
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 0.0e+00 1231.9 1084 59.1
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 0.0e+00 1230.7 870 69.8
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 0.0e+00 1230.3 875 69.5
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 0.0e+00 1216.1 932 66.5
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 0.0e+00 1205.7 825 70.7
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1199.9 1058 60.9
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 0.0e+00 1194.9 1213 54.8
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1193.7 1002 62.9
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1188.7 1050 59.1
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1096.3 864 63.3
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 0.0e+00 1081.2 1063 54.0
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 1.1e-294 1016.9 700 71.9
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 5.4e-281 971.5 892 56.4
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 3.5e-272 942.2 496 96.0
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 4.9e-266 921.8 1101 46.1
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 1.0e-263 914.1 536 88.6
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 1.2e-259 900.6 981 48.8
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.3e-258 897.1 644 69.4
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 5.3e-244 848.6 598 69.9
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 5.0e-242 842.0 974 45.6
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 1.8e-228 797.0 709 58.4
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 6.3e-221 771.9 944 45.0
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 1.3e-160 571.6 472 63.1
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 2.1e-152 544.3 406 69.5
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 5.5e-148 529.6 1069 34.2
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 8.5e-141 505.8 397 65.7
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 3.7e-136 490.3 318 75.2
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 3.2e-116 424.1 389 56.6
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 2.1e-91 341.7 223 73.5
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.9e-72 278.1 225 64.0
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 3.7e-72 277.7 290 50.7
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.4e-63 249.2 233 55.8
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 5.6e-60 237.3 160 74.4
GSVIVG01016718001 Vitis vinifera HOM05D001849 ORTHO05D004689 1.6e-59 235.7 220 60.0
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 1.1e-58 233.0 177 64.4
Lalb_Chr10g0101331 Lupinus albus HOM05D001849 ORTHO05D004689 1.5e-52 212.6 211 56.4
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.8e-51 208.4 174 66.7
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.6e-46 192.6 192 59.4
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 1.6e-46 192.6 144 66.0
Cc04_g01050 Coffea canephora HOM05D001849 ORTHO05D004689 4.6e-46 191.0 211 54.5
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 3.8e-40 171.4 177 52.0
CAN.G1243.8 Capsicum annuum HOM05D001849 ORTHO05D004689 4.2e-39 167.9 192 53.1
Cpa.g.sc169.33 Carica papaya HOM05D001849 ORTHO05D004689 5.5e-39 167.5 176 54.0
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 3.5e-38 164.9 163 52.8
Duzib235G0009 Durio zibethinus HOM05D001849 ORTHO05D004689 1.1e-34 153.3 174 51.1
Hund18673 Selenicereus undatus HOM05D001849 ORTHO05D004689 1.4e-34 152.9 176 52.8
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 2.0e-33 149.1 93 69.9
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 4.2e-31 141.4 90 76.7
TAR730G0002 Trochodendron aralioides HOM05D001849 ORTHO05D004689 7.1e-31 140.6 155 52.9
CDE07G1706 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 2.1e-30 139.0 208 44.7
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 1.3e-29 136.3 107 66.4
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.9e-28 132.5 88 67.0
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.3e-28 131.7 104 61.5
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 6.3e-27 127.5 210 42.4
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.4e-26 125.6 100 61.0
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 7.7e-25 120.6 99 59.6
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 2.2e-24 119.0 90 65.6
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 4.2e-23 114.8 168 40.5
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 3.7e-19 101.7 55 92.7
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 1.4e-18 99.8 441 26.1
Atru.chr12.2396 Acer truncatum HOM05D001849 ORTHO05D004689 5.3e-18 97.8 143 46.9
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 1.2e-17 96.7 449 23.8
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 1.5e-17 96.3 55 89.1
Cre10.g425675 Chlamydomonas reinhardtii HOM05D001849 ORTHO05D004689 1.5e-17 96.3 326 23.6
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.0e-16 93.6 93 52.7
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.4e-13 83.2 100 45.0
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.8e-13 82.8 67 56.7
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 2.3e-13 82.4 71 56.3
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.5e-12 79.7 54 64.8
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 2.0e-12 79.3 52 69.2
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 7.4e-12 77.4 53 66.0
SMO304G0058 Selaginella moellendorffii HOM05D042764 ORTHO05D004689 8.2e-11 73.9 192 30.7
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 1.1e-10 73.6 70 58.6
Hma1.2p1_0225F.1_g094790 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 2.4e-10 72.4 96 46.9
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.0e-08 67.0 41 78.0
CSS0017686 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.9e-08 65.5 50 64.0
Atru.chr12.2376 Acer truncatum HOM05D001849 ORTHO05D004689 8.5e-08 63.9 87 48.3
C01p30760 Brassica napus HOM05D001849 ORTHO05D042635 8.5e-08 63.9 171 34.5
Hma1.2p1_0436F.1_g152830 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 6.1e-06 57.8 67 50.7


User provided reference genes

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