Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 1.7e-291 1005.4 543 100.0
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 6.1e-265 917.1 543 87.7
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 1.2e-255 886.3 540 88.3
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 6.0e-244 847.4 543 85.1
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 1.1e-242 843.2 544 83.3
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 7.5e-239 830.5 543 79.6
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 7.6e-231 803.9 540 81.7
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 1.9e-229 799.3 541 81.9
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 6.6e-227 790.8 546 78.0
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 8.7e-227 790.4 546 81.7
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 2.2e-222 775.8 526 81.7
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 3.8e-206 721.8 587 66.3
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 6.3e-169 598.2 403 83.1
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 2.4e-128 463.4 542 47.2
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 5.6e-125 452.2 542 45.9
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 5.6e-125 452.2 547 48.1
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 6.2e-124 448.7 547 46.3
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 7.8e-119 431.8 563 43.9
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 3.9e-118 429.5 546 45.4
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 1.2e-116 424.5 566 41.9
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 2.8e-116 423.3 537 45.6
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 5.2e-115 419.1 558 42.1
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 6.8e-115 418.7 551 42.6
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 8.9e-115 418.3 559 41.9
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 1.2e-114 417.9 551 45.0
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 4.4e-114 416.0 544 44.1
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 7.6e-114 415.2 596 41.4
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 1.3e-113 414.5 546 43.6
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 3.8e-113 412.9 568 41.0
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 4.9e-113 412.5 555 41.1
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 6.4e-113 412.1 551 42.5
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 1.4e-112 411.0 579 43.0
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 1.9e-112 410.6 543 43.5
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 5.4e-112 409.1 567 42.2
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 1.2e-111 407.9 542 43.7
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 1.6e-111 407.5 562 40.6
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 1.6e-111 407.5 591 40.4
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 6.6e-110 402.1 578 43.3
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 1.1e-109 401.4 541 41.8
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 2.5e-109 400.2 547 42.8
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 2.5e-109 400.2 548 44.0
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 3.3e-109 399.8 544 41.9
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 4.3e-109 399.4 583 42.0
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 1.2e-106 391.3 583 42.9
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 1.5e-106 391.0 717 35.0
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 2.6e-106 390.2 602 39.4
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 3.4e-106 389.8 530 44.5
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 1.7e-105 387.5 571 41.2
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 1.7e-105 387.5 577 40.6
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 4.9e-105 386.0 543 40.9
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 2.4e-104 383.6 573 41.5
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 2.7e-103 380.2 563 40.7
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 1.3e-102 377.9 558 40.1
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 3.0e-102 376.7 549 40.6
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 3.9e-102 376.3 552 41.3
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 8.7e-102 375.2 557 42.0
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 4.3e-101 372.9 553 41.6
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 7.3e-101 372.1 552 40.9
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 9.6e-101 371.7 583 41.3
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 9.6e-101 371.7 557 40.2
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 2.1e-100 370.5 549 41.5
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 4.0e-99 366.3 545 39.3
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 9.0e-99 365.2 566 39.2
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 9.9e-98 361.7 568 38.7
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 9.9e-98 361.7 561 39.2
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 7.1e-96 355.5 582 37.5
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.6e-95 352.8 576 39.1
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 3.7e-92 343.2 603 36.0
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 2.4e-91 340.5 557 38.8
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 3.1e-91 340.1 546 37.9
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 4.0e-91 339.7 486 47.3
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 2.6e-90 337.0 545 41.1
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 3.4e-90 336.7 546 37.4
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 5.8e-90 335.9 537 39.3
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 1.8e-86 324.3 583 35.8
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 3.0e-86 323.6 538 38.3
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 1.4e-83 314.7 527 38.7
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 1.8e-83 314.3 568 36.8
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 1.8e-83 314.3 568 33.8
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 1.8e-83 314.3 557 39.5
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 4.1e-83 313.2 554 37.7
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 9.3e-80 302.0 693 33.5
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 9.3e-80 302.0 583 36.5
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 1.1e-77 295.0 504 38.7
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 3.3e-77 293.5 484 36.4
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 1.1e-75 288.5 487 37.6
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 1.7e-73 281.2 458 35.8
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 5.0e-73 279.6 562 33.6
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 5.5e-72 276.2 505 38.2
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 7.2e-64 249.2 594 31.1
Cpa.g.sc108.22 Carica papaya HOM05D006560 ORTHO05D008164 1.8e-62 244.6 411 38.9
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 2.3e-62 244.2 498 34.7
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 3.7e-60 236.9 208 54.8
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 2.5e-56 224.2 402 37.6
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 1.1e-53 215.3 465 33.5
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 1.7e-52 211.5 403 36.7
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 1.7e-52 211.5 476 32.4
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 7.2e-48 196.1 194 50.0
Migut.L00953 Erythranthe guttata HOM05D006560 ORTHO05D008164 5.7e-45 186.4 445 32.4
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 5.7e-45 186.4 151 60.3
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 3.7e-44 183.7 151 59.6
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 1.8e-43 181.4 213 46.5
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 4.1e-43 180.3 475 32.2
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 1.7e-41 174.9 544 28.5
Sopen02g026150 Solanum pennellii HOM05D006560 ORTHO05D008164 2.0e-37 161.4 356 34.0
Migut.L00936 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.6e-37 161.0 422 30.8
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 5.4e-35 153.3 142 52.1
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.6e-34 151.8 121 59.5
Ciclev10013450m.g Citrus clementina HOM05D006560 ORTHO05D008164 9.8e-29 132.5 333 32.7
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 3.7e-28 130.6 592 25.3
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 9.2e-27 125.9 346 30.3
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 6.6e-25 119.8 124 46.8
CSS0034206 Camellia sinensis var. sinensis HOM05D006560 ORTHO05D008164 6.2e-23 113.2 126 51.6
BcaNung05241 Brassica carinata HOM05D006560 ORTHO05D008164 5.8e-21 106.7 131 71.0
Nn3g18626 Nelumbo nucifera HOM05D006560 ORTHO05D008164 1.2e-13 82.4 79 59.5
Migut.L00946 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.7e-12 78.6 142 31.7
CBR_g29321 Chara braunii HOM05D006560 ORTHO05D008164 5.4e-11 73.6 201 29.4
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.7e-10 71.2 48 60.4
FAN18G2665 Fragaria x ananassa HOM05D006560 ORTHO05D008164 2.7e-10 71.2 68 50.0
Dinv24123 Davidia involucrata HOM05D006560 ORTHO05D008164 3.6e-07 60.8 30 83.3


User provided reference genes

Program Settings