Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 1.2e-247 859.4 442 100.0
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 3.4e-245 851.3 442 99.1
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 1.0e-233 813.1 445 93.9
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 4.7e-231 804.3 445 93.5
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 2.0e-229 798.9 445 93.0
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 1.9e-227 792.3 445 92.6
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 1.0e-225 786.6 445 91.7
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 7.3e-224 780.4 448 91.5
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 2.6e-221 771.9 445 89.7
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 5.8e-221 770.8 445 90.1
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 1.3e-220 769.6 445 89.9
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 1.7e-220 769.2 445 90.6
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 2.9e-220 768.5 445 89.7
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 7.8e-218 760.4 448 88.8
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 3.0e-217 758.4 449 89.3
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 3.0e-217 758.4 449 89.3
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 6.2e-215 750.7 475 83.6
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 1.5e-213 746.1 474 84.0
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 2.0e-205 719.2 460 81.7
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 6.2e-191 671.0 442 78.1
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 3.9e-185 651.7 453 75.1
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 1.1e-182 643.7 456 74.3
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 3.1e-182 642.1 456 74.1
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 3.4e-181 638.6 451 74.5
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 1.3e-180 636.7 396 85.1
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 2.5e-179 632.5 451 73.6
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 2.1e-178 629.4 451 72.9
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 3.5e-178 628.6 445 74.4
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 5.1e-177 624.8 449 73.1
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 1.8e-174 616.3 449 72.4
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 9.0e-174 614.0 457 71.6
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 2.6e-173 612.5 450 71.3
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 1.8e-169 599.7 448 71.7
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 3.0e-169 599.0 450 71.1
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.9e-169 598.6 444 70.9
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 2.5e-168 595.9 447 70.0
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 4.3e-168 595.1 452 71.2
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 5.7e-168 594.7 451 71.4
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 2.2e-167 592.8 451 69.8
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 8.2e-167 590.9 444 70.0
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 8.2e-167 590.9 449 70.4
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 1.1e-166 590.5 443 70.2
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 3.1e-166 589.0 451 69.4
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 6.9e-166 587.8 452 69.5
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 9.1e-166 587.4 446 70.6
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 2.0e-165 586.3 451 70.5
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 5.9e-165 584.7 445 69.2
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 7.7e-165 584.3 418 73.0
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 1.3e-164 583.6 452 69.0
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 1.1e-163 580.5 449 69.0
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 1.4e-163 580.1 444 70.5
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 2.1e-162 576.2 454 70.0
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 2.7e-162 575.9 444 70.0
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 1.8e-161 573.2 454 69.6
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 8.8e-161 570.9 446 68.6
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 8.8e-161 570.9 443 68.6
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 1.1e-160 570.5 442 69.2
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 3.3e-160 568.9 445 68.3
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 7.4e-160 567.8 445 68.1
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 1.3e-159 567.0 449 68.8
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.7e-159 566.6 441 68.9
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 2.2e-159 566.2 442 68.8
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 2.8e-159 565.8 442 68.6
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 3.7e-159 565.5 449 69.5
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 4.8e-159 565.1 441 68.3
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 8.2e-159 564.3 446 68.8
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 1.1e-158 563.9 441 68.0
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 1.1e-158 563.9 452 68.6
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 5.3e-158 561.6 451 68.1
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 9.1e-158 560.8 463 67.2
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 1.5e-157 560.1 393 73.0
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 4.5e-157 558.5 441 68.7
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 5.9e-157 558.1 445 67.6
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 5.9e-157 558.1 452 67.3
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 2.2e-156 556.2 458 67.0
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.9e-156 555.8 455 66.4
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.8e-156 555.4 458 66.6
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 5.0e-156 555.1 487 63.4
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 8.5e-156 554.3 448 67.4
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.1e-155 553.9 451 66.5
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 1.4e-155 553.5 443 66.4
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 9.4e-155 550.8 444 67.1
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 1.2e-154 550.4 444 67.1
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 1.6e-154 550.1 451 67.0
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 1.4e-153 547.0 428 69.6
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 1.8e-153 546.6 456 67.1
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 2.3e-153 546.2 452 65.0
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 3.0e-153 545.8 469 64.4
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 2.2e-151 539.7 456 66.2
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 3.7e-151 538.9 449 63.9
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 6.3e-151 538.1 439 65.6
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 1.6e-149 533.5 456 64.5
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 2.0e-149 533.1 465 66.7
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 2.0e-149 533.1 453 64.2
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 7.7e-149 531.2 410 68.5
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 1.3e-148 530.4 447 62.9
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 3.8e-148 528.9 451 65.4
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 8.5e-148 527.7 428 66.4
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 2.7e-146 522.7 449 64.1
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 8.0e-146 521.2 451 62.5
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 3.0e-145 519.2 451 65.0
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 3.4e-144 515.8 446 63.7
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 5.7e-144 515.0 496 59.9
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 9.7e-144 514.2 411 67.4
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 9.1e-142 507.7 453 62.9
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 2.0e-141 506.5 450 60.4
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 2.2e-140 503.1 453 61.6
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 8.5e-140 501.1 453 62.9
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 2.5e-139 499.6 450 62.7
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 1.3e-135 487.3 451 59.9
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 3.5e-133 479.2 462 60.2
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 4.2e-131 472.2 426 62.9
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 6.1e-130 468.4 452 60.0
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 3.7e-127 459.1 425 60.2
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 7.8e-125 451.4 371 67.1
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 1.7e-124 450.3 456 58.8
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 8.6e-124 448.0 416 61.5
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 3.6e-122 442.6 451 57.9
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 8.0e-122 441.4 344 71.5
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 4.4e-120 435.6 413 59.8
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 4.1e-118 429.1 507 51.5
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 6.8e-113 411.8 392 58.9
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 8.9e-113 411.4 482 53.7
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 4.4e-112 409.1 342 64.9
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 8.3e-111 404.8 472 49.8
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 8.3e-111 404.8 423 56.5
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 1.4e-110 404.1 468 51.1
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 1.3e-108 397.5 343 60.3
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 3.9e-108 396.0 244 89.8
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 5.8e-104 382.1 502 46.4
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 2.7e-101 373.2 442 50.0
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.3e-95 354.4 486 43.4
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 8.7e-92 341.7 372 51.6
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 1.5e-88 330.9 240 68.3
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 4.2e-78 296.2 432 42.8
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 8.4e-71 271.9 519 37.2
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.6e-69 267.7 391 41.4
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 3.9e-68 263.1 356 47.5
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 6.7e-68 262.3 479 40.3
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 1.1e-67 261.5 173 75.7
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 7.6e-64 248.8 180 70.6
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 1.4e-62 244.6 181 70.2
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 8.7e-60 235.3 172 69.8
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 2.9e-55 220.3 399 36.1
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 1.1e-49 201.8 261 46.7
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 4.1e-49 199.9 129 76.7
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 2.6e-43 180.6 379 34.8
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 1.7e-39 167.9 262 38.5
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 4.2e-38 163.3 250 44.0
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 6.3e-34 149.4 114 60.5
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 2.0e-32 144.4 172 51.2
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 2.0e-32 144.4 361 34.6
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 6.5e-31 139.4 128 70.3
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 5.4e-25 119.8 136 48.5
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 7.0e-25 119.4 89 64.0
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 9.1e-25 119.0 200 42.5
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 2.7e-24 117.5 131 57.3
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 2.7e-21 107.5 135 55.6
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 4.7e-21 106.7 145 47.6
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 3.0e-20 104.0 149 46.3
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 1.5e-19 101.7 294 27.9
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 3.7e-18 97.1 169 41.4
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 4.3e-14 83.6 53 75.5
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 5.6e-14 83.2 55 69.1
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 7.2e-14 82.8 99 44.4
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 7.2e-14 82.8 81 61.7
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 3.5e-08 63.9 42 71.4
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 7.8e-08 62.8 43 74.4
SHI33154 Sapria himalayana HOM05D004146 ORTHO05D004843 8.6e-07 59.3 50 60.0
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 1.5e-06 58.5 42 71.4
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.5e-06 58.5 100 35.0
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 1.9e-06 58.2 40 75.0
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.3e-06 57.4 32 87.5


User provided reference genes

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