Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 5.9e-141 504.2 257 100.0
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 6.5e-132 474.2 257 95.3
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 5.3e-126 454.5 257 89.5
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.2e-115 418.7 251 85.7
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 4.7e-114 414.8 259 83.4
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 9.8e-112 407.1 259 81.9
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.1e-110 403.7 255 80.8
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 1.3e-103 380.2 256 78.1
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 3.7e-103 378.6 256 77.7
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 3.7e-103 378.6 256 77.7
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 8.3e-103 377.5 256 77.0
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 2.4e-102 375.9 256 77.0
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.5e-101 372.1 249 78.7
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 3.1e-81 305.8 256 64.5
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 6.8e-81 304.7 251 64.9
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 2.6e-80 302.8 251 64.1
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.4e-80 302.4 251 64.5
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 4.4e-80 302.0 251 64.1
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 7.5e-80 301.2 251 64.1
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 9.8e-80 300.8 251 63.7
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.3e-79 300.4 250 65.6
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.3e-79 300.4 241 66.8
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.9e-79 298.5 228 68.4
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 8.3e-79 297.7 241 65.6
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.1e-78 297.4 251 62.5
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.4e-78 296.2 251 62.2
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 5.4e-78 295.0 251 61.4
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 2.1e-77 293.1 255 63.9
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 4.6e-77 292.0 233 63.9
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 7.8e-77 291.2 256 60.2
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 7.8e-77 291.2 253 60.1
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 7.8e-77 291.2 245 63.3
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.3e-76 290.4 251 62.2
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 6.6e-76 288.1 250 61.6
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.9e-75 286.6 258 60.9
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.5e-75 286.2 219 66.7
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.5e-75 286.2 214 67.8
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 2.8e-74 282.7 249 60.2
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.6e-74 282.3 214 66.8
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.6e-74 282.3 214 66.8
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.4e-73 280.4 244 63.1
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 2.3e-73 279.6 246 61.0
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 3.1e-73 279.3 255 60.4
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 6.8e-73 278.1 250 58.8
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 8.9e-73 277.7 212 66.0
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 8.9e-73 277.7 244 61.9
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 8.9e-73 277.7 243 60.9
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 1.5e-72 276.9 214 65.9
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 3.4e-72 275.8 205 68.8
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 3.4e-72 275.8 212 67.9
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.4e-72 275.8 256 59.8
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 4.4e-72 275.4 243 60.9
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 4.4e-72 275.4 252 59.5
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 5.8e-72 275.0 251 61.4
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 5.8e-72 275.0 244 59.8
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 7.6e-72 274.6 205 64.4
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 7.6e-72 274.6 214 66.4
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 9.9e-72 274.2 242 62.4
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 1.3e-71 273.9 227 64.3
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 1.7e-71 273.5 253 59.7
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 1.7e-71 273.5 250 61.2
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.7e-71 273.5 257 59.5
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 1.7e-71 273.5 251 61.8
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.2e-71 273.1 236 61.4
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 3.8e-71 272.3 257 59.5
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 4.9e-71 271.9 249 62.2
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.9e-71 271.9 255 60.0
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 6.4e-71 271.6 255 60.0
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 8.4e-71 271.2 257 58.0
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 8.4e-71 271.2 197 69.5
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.1e-70 270.8 212 67.5
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.4e-70 269.6 180 72.2
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 3.2e-70 269.2 253 61.3
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 4.1e-70 268.9 248 59.7
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 4.1e-70 268.9 229 60.7
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 5.4e-70 268.5 254 58.7
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 7.1e-70 268.1 249 60.6
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 7.1e-70 268.1 249 60.2
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 9.2e-70 267.7 256 57.8
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.6e-69 266.9 223 63.7
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 2.1e-69 266.5 183 71.0
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 2.1e-69 266.5 262 59.9
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 4.6e-69 265.4 250 58.4
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 6.0e-69 265.0 244 61.1
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 6.0e-69 265.0 254 59.1
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 6.0e-69 265.0 260 55.8
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 7.8e-69 264.6 256 57.4
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 7.8e-69 264.6 240 59.2
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 7.8e-69 264.6 252 58.3
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 1.0e-68 264.2 254 59.1
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 1.0e-68 264.2 259 58.3
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 1.0e-68 264.2 197 68.0
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 1.3e-68 263.8 251 58.6
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.3e-68 263.8 251 60.6
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.7e-68 263.5 183 70.5
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 3.0e-68 262.7 247 57.1
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.0e-68 262.7 259 60.2
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 3.0e-68 262.7 231 61.5
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 5.1e-68 261.9 180 70.6
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 1.1e-67 260.8 235 62.6
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 1.1e-67 260.8 264 55.7
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 1.9e-67 260.0 227 63.0
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.9e-67 260.0 219 65.3
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 2.5e-67 259.6 241 58.1
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 3.3e-67 259.2 215 62.8
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 7.3e-67 258.1 222 60.8
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 9.6e-67 257.7 240 58.3
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 1.2e-66 257.3 212 62.7
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 1.6e-66 256.9 259 56.8
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 1.6e-66 256.9 181 70.7
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 4.7e-66 255.4 242 57.4
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 4.7e-66 255.4 188 67.6
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.4e-65 253.8 251 55.4
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.0e-65 252.3 253 57.7
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 8.9e-65 251.1 248 54.4
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.5e-64 250.4 254 55.1
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.5e-64 250.4 215 60.9
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 3.8e-63 245.7 251 57.4
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.1e-62 244.2 231 59.3
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 1.7e-60 236.9 245 53.5
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 1.1e-59 234.2 204 60.8
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 1.5e-59 233.8 250 55.6
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 8.1e-58 228.0 172 68.0
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 8.1e-58 228.0 249 53.8
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.8e-57 226.9 242 56.6
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 4.0e-57 225.7 228 53.5
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 1.2e-56 224.2 181 63.0
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.2e-56 224.2 180 60.0
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 3.4e-56 222.6 251 48.6
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 3.4e-56 222.6 197 59.9
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 7.6e-56 221.5 176 61.4
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.4e-54 217.2 212 52.8
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 4.2e-54 215.7 213 54.5
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 1.1e-51 207.6 146 67.1
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.1e-49 201.1 214 51.9
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 3.1e-49 199.5 132 71.2
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.2e-48 197.6 153 64.1
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.3e-47 194.1 122 81.1
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.2e-47 193.4 212 53.8
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 2.1e-42 176.8 122 67.2
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 6.2e-42 175.3 165 57.0
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 5.3e-41 172.2 111 72.1
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 2.0e-40 170.2 217 45.2
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 2.0e-40 170.2 186 50.0
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.4e-38 164.1 198 48.5
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 2.5e-38 163.3 246 45.9
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 5.5e-38 162.2 181 50.8
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 5.5e-38 162.2 127 66.1
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 3.9e-36 156.0 207 47.8
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 3.3e-35 152.9 246 45.1
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 3.1e-33 146.4 97 70.1
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 6.9e-33 145.2 230 39.6
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 9.0e-33 144.8 169 49.1
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.0e-32 143.7 166 54.2
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 4.3e-27 125.9 78 74.4
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 5.7e-27 125.6 78 73.1
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 8.2e-26 121.7 78 76.9
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 5.5e-22 109.0 116 51.7
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 4.4e-19 99.4 75 65.3
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 1.5e-16 90.9 103 44.7
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 4.5e-16 89.4 77 54.5
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 7.7e-16 88.6 86 55.8
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 4.7e-13 79.3 124 44.4
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.8e-12 77.4 50 76.0
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 1.8e-12 77.4 189 33.3
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 4.4e-11 72.8 49 75.5
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.8e-09 67.4 46 67.4
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.8e-09 67.4 135 37.8
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 4.1e-09 66.2 138 35.5
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 4.5e-08 62.8 54 55.6
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 2.5e-06 57.0 181 27.6
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 3.2e-06 56.6 162 28.4
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 7.2e-06 55.5 62 46.8


User provided reference genes

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