Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 7.8e-138 493.8 252 100.0
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.2e-135 486.5 252 98.8
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 1.6e-130 469.5 252 94.4
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.5e-128 462.2 253 93.7
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.6e-127 459.5 252 92.5
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.1e-127 459.1 252 93.3
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 2.1e-119 432.6 250 88.8
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 1.1e-118 430.3 250 88.8
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 3.1e-118 428.7 251 88.4
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 6.8e-118 427.6 250 88.4
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 6.6e-113 411.0 255 83.9
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 6.6e-113 411.0 255 84.3
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 7.3e-112 407.5 253 84.6
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 9.0e-110 400.6 241 85.5
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 1.3e-108 396.7 256 80.9
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.3e-104 381.7 256 77.0
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 5.3e-102 374.8 253 76.3
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 9.3e-99 364.0 255 73.7
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 1.3e-97 360.1 221 83.7
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.9e-97 358.6 258 72.5
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 1.5e-96 356.7 250 77.2
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 3.3e-96 355.5 258 71.7
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.4e-93 345.5 258 69.8
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.9e-92 342.4 256 69.9
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 1.9e-91 339.7 260 68.1
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 7.1e-91 337.8 255 71.0
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 1.3e-87 327.0 245 68.6
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.1e-86 323.9 265 66.0
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 1.4e-86 323.6 266 66.2
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.8e-86 323.2 256 65.6
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.8e-86 323.2 261 65.1
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 2.4e-86 322.8 251 68.5
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.1e-86 322.4 180 85.6
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 6.9e-86 321.2 259 65.3
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 6.9e-86 321.2 242 69.0
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 6.9e-86 321.2 242 69.0
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 2.0e-85 319.7 260 65.8
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 3.4e-85 318.9 265 64.9
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 3.4e-85 318.9 264 65.9
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 3.4e-85 318.9 263 65.8
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 5.8e-85 318.2 184 83.7
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 5.8e-85 318.2 259 67.2
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 5.8e-85 318.2 256 65.6
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 7.6e-85 317.8 252 65.9
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 1.0e-84 317.4 253 68.4
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 1.3e-84 317.0 260 66.5
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.2e-84 316.2 257 64.6
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 2.2e-84 316.2 231 70.6
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 2.2e-84 316.2 255 65.9
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 2.9e-84 315.8 258 68.6
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 2.9e-84 315.8 187 80.2
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 3.8e-84 315.5 200 78.0
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 4.9e-84 315.1 230 70.9
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 8.4e-84 314.3 253 68.0
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 8.4e-84 314.3 263 65.0
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 8.4e-84 314.3 190 80.0
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.1e-83 313.9 259 65.6
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 1.1e-83 313.9 222 71.2
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.1e-83 313.9 261 65.5
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.1e-83 313.9 256 66.4
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 1.4e-83 313.5 247 68.0
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 1.4e-83 313.5 253 66.0
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.4e-83 313.5 258 65.1
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 2.5e-83 312.8 253 65.6
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 2.5e-83 312.8 184 82.6
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 3.2e-83 312.4 260 66.9
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 3.2e-83 312.4 256 66.8
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.2e-83 312.0 262 64.9
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 5.5e-83 311.6 257 66.5
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 5.5e-83 311.6 184 81.0
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.5e-83 311.6 259 66.8
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 5.5e-83 311.6 181 82.9
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 9.3e-83 310.8 259 64.1
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 9.3e-83 310.8 253 66.4
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 9.3e-83 310.8 260 66.2
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 1.2e-82 310.5 219 72.6
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 2.1e-82 309.7 237 68.8
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.1e-82 309.7 253 66.0
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 2.7e-82 309.3 249 64.7
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 2.7e-82 309.3 252 65.1
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 3.5e-82 308.9 255 65.5
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 3.5e-82 308.9 256 64.5
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 3.5e-82 308.9 244 68.0
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 4.6e-82 308.5 265 64.2
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 4.6e-82 308.5 258 65.1
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 4.6e-82 308.5 239 68.6
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 4.6e-82 308.5 263 64.3
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 6.0e-82 308.1 254 64.2
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 6.0e-82 308.1 235 66.8
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 1.0e-81 307.4 254 64.2
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 1.0e-81 307.4 252 64.3
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 1.8e-81 306.6 257 64.6
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 2.3e-81 306.2 261 63.6
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 3.0e-81 305.8 251 65.7
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.9e-81 305.4 256 64.8
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 5.1e-81 305.1 251 64.5
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 5.1e-81 305.1 225 68.4
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.1e-80 303.9 255 64.7
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 1.1e-80 303.9 180 80.0
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.5e-80 303.5 259 64.9
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 1.5e-80 303.5 250 64.8
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 2.5e-80 302.8 241 66.0
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 4.3e-80 302.0 254 64.2
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 4.3e-80 302.0 254 63.8
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 4.3e-80 302.0 254 63.8
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 4.3e-80 302.0 246 64.6
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 4.3e-80 302.0 257 64.2
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 4.3e-80 302.0 257 65.4
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 7.4e-80 301.2 215 71.2
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.2e-79 299.7 263 63.9
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.2e-79 299.7 259 65.3
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 6.3e-79 298.1 189 76.2
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 1.1e-78 297.4 178 81.5
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.4e-78 297.0 237 66.7
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 1.8e-78 296.6 264 61.4
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 6.9e-78 294.7 254 63.8
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 2.6e-77 292.7 256 62.1
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 5.5e-75 285.0 242 61.2
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 7.9e-74 281.2 166 81.3
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 1.4e-73 280.4 189 71.4
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.5e-72 276.9 228 65.8
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 3.3e-72 275.8 237 63.7
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 5.7e-72 275.0 175 77.7
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 7.4e-72 274.6 195 68.7
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 6.3e-71 271.6 262 59.9
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 2.4e-70 269.6 184 73.4
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 4.1e-70 268.9 185 73.5
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 5.3e-70 268.5 216 63.0
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 4.5e-69 265.4 183 68.3
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.3e-68 263.8 183 67.8
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 2.9e-68 262.7 247 58.7
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 2.9e-68 262.7 179 70.4
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 3.9e-65 252.3 185 66.5
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 4.5e-61 238.8 165 71.5
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.0e-60 237.7 225 58.7
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.2e-59 232.6 259 55.2
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 4.7e-58 228.8 232 57.8
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 4.7e-58 228.8 152 71.1
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 4.1e-54 215.7 214 56.1
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 4.5e-53 212.2 134 76.1
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 7.2e-51 204.9 197 56.9
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 2.7e-50 203.0 225 53.8
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 4.7e-50 202.2 118 79.7
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 9.7e-48 194.5 229 50.2
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 9.7e-48 194.5 124 81.5
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 7.0e-46 188.3 176 59.7
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 1.6e-45 187.2 248 50.0
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 2.7e-42 176.4 248 49.2
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.6e-42 176.0 141 66.0
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 3.6e-42 176.0 127 71.7
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 6.1e-42 175.3 258 46.1
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.0e-41 174.5 219 46.1
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 1.8e-41 173.7 168 56.5
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 2.6e-40 169.9 99 85.9
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 2.9e-36 156.4 80 95.0
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 1.5e-35 154.1 79 93.7
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 2.0e-29 133.7 103 61.2
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 5.6e-27 125.6 78 75.6
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 1.7e-23 114.0 97 56.7
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 6.4e-23 112.1 114 54.4
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.0e-20 104.8 123 48.8
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.1e-19 101.3 88 58.0
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 5.4e-14 82.4 215 34.0
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 7.8e-13 78.6 52 73.1
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 9.5e-11 71.6 71 47.9
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 2.1e-10 70.5 150 36.0
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 2.8e-10 70.1 112 41.1
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 4.7e-10 69.3 123 35.8
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 4.0e-09 66.2 149 32.9
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 5.2e-09 65.9 55 58.2
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 6.8e-09 65.5 49 65.3
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.2e-08 64.7 44 63.6
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 2.0e-08 63.9 62 56.5
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.9e-06 57.4 138 32.6
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 4.1e-06 56.2 101 38.6
BolC2t10115H Brassica oleracea HOM05D034141 ORTHO05D033148 9.2e-06 55.1 36 75.0


User provided reference genes

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