Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1729.9 859 100.0
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1713.4 859 98.8
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1640.6 859 94.6
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1625.5 859 94.1
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1625.1 859 93.4
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1625.1 859 94.2
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1616.3 859 93.2
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1616.3 859 93.2
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1616.3 859 93.2
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1615.9 859 93.0
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1615.9 859 93.0
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1536.9 862 88.2
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1510.0 863 85.7
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1360.5 863 78.0
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1359.4 866 78.2
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1356.3 866 77.8
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1354.7 866 78.2
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1338.9 883 75.7
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1329.7 865 75.5
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1329.3 865 76.9
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1327.8 854 77.4
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1324.3 866 75.8
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1323.5 865 76.2
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1321.2 866 75.5
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1319.7 867 76.7
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1319.3 866 76.1
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1319.3 864 75.5
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1317.8 865 76.5
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1317.8 866 75.4
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1317.4 855 76.7
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1315.4 865 76.1
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1313.5 855 76.0
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1303.9 912 72.4
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1303.1 866 74.7
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1302.3 867 75.0
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1298.1 866 74.4
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1298.1 854 75.3
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1297.7 872 74.3
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1297.7 872 74.3
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1297.3 867 74.7
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1297.3 867 74.7
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1294.3 872 74.2
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1293.5 865 75.0
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1293.1 864 74.5
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1292.7 870 74.1
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1291.9 864 74.3
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1290.8 864 73.8
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1290.4 856 75.5
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1289.2 864 74.4
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1288.5 864 74.1
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1288.1 872 74.0
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1281.2 869 74.9
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1277.7 865 73.1
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1277.7 856 74.3
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1275.0 856 74.2
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1273.8 857 74.4
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1271.1 871 72.0
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1268.1 871 72.3
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1265.0 925 69.9
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1262.7 865 73.1
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1262.3 871 72.1
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1261.5 858 72.7
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1261.1 854 72.7
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1260.4 862 71.7
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1259.2 856 73.9
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1259.2 920 69.2
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1257.3 871 72.0
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1256.9 865 72.1
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1254.6 854 73.1
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1253.0 867 72.0
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1247.6 888 70.7
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1247.6 945 68.6
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1247.3 865 72.1
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1246.1 863 72.2
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1243.8 799 80.0
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1240.7 857 72.0
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1238.0 865 71.6
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1236.9 930 67.5
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1236.5 930 67.5
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1236.1 857 71.9
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1228.8 880 71.6
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1227.6 807 74.1
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1225.3 693 90.5
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1220.7 959 65.5
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1218.0 862 69.5
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1213.7 783 77.3
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1203.7 895 69.3
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1172.5 878 66.2
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1172.1 851 67.9
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1161.7 744 76.5
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1158.3 862 66.8
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 2.1e-304 1048.9 854 63.1
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 9.9e-302 1040.0 862 63.5
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 5.3e-295 1017.7 682 78.3
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 3.4e-294 1015.0 851 59.9
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 1.9e-292 1009.2 853 58.5
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 3.2e-292 1008.4 900 59.1
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.0e-290 1003.4 868 62.9
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 3.3e-281 971.8 1157 49.8
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 6.5e-277 957.6 852 55.6
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 4.1e-263 911.8 644 70.7
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 6.3e-256 887.9 874 58.4
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 8.0e-243 844.3 620 68.4
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 9.1e-239 830.9 748 60.8
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 5.6e-196 688.7 494 69.8
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 3.0e-189 666.4 434 77.2
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 2.6e-185 653.3 469 72.3
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.9e-176 622.5 623 56.5
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 1.8e-173 614.0 427 70.3
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 5.0e-160 569.3 873 39.2
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 1.6e-158 564.3 865 38.6
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 1.8e-154 550.8 343 79.9
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 9.1e-154 548.5 359 77.2
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 6.5e-152 542.3 371 77.9
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 5.5e-143 512.7 378 66.7
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 4.8e-139 499.6 615 50.6
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 2.3e-133 480.7 848 34.8
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 4.9e-123 446.4 453 52.8
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 2.9e-115 420.6 990 30.6
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 2.7e-105 387.5 349 53.3
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 7.3e-95 352.8 322 54.3
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.8e-86 324.3 282 60.3
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.5e-84 318.5 157 94.3
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 3.1e-77 294.3 260 58.8
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.2e-76 292.4 218 67.9
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 3.8e-75 287.3 165 83.0
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 7.4e-71 273.1 310 47.4
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 2.1e-41 175.3 97 83.5
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 1.5e-36 159.1 101 72.3
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 1.3e-35 156.0 97 75.3
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 6.1e-33 147.1 94 75.5
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 6.7e-32 143.7 103 68.9
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 7.4e-31 140.2 94 71.3
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 9.7e-31 139.8 85 78.8
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 7.0e-29 133.7 87 73.6
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 7.0e-29 133.7 111 64.0
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 2.0e-28 132.1 91 69.2
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 5.0e-27 127.5 167 47.9
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 7.2e-26 123.6 185 45.9
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.6e-25 122.5 125 56.8
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 2.1e-25 122.1 67 82.1
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 1.8e-24 119.0 113 55.8
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 2.3e-24 118.6 96 64.6
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 3.0e-24 118.2 102 61.8
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 1.5e-23 115.9 103 61.2
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 9.7e-23 113.2 68 72.1
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 2.4e-21 108.6 64 75.0
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 4.1e-21 107.8 96 59.4
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-20 105.9 61 72.1
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-17 95.9 113 46.9
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-16 92.8 81 61.7
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 3.0e-16 91.7 87 58.6
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 3.0e-16 91.7 87 58.6
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.4e-15 88.2 136 41.9
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 4.4e-15 87.8 52 76.9
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 4.4e-15 87.8 52 76.9
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.1e-10 73.2 37 91.9
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 1.4e-08 66.2 79 46.8
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 6.8e-08 63.9 83 38.6
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 6.8e-08 63.9 85 48.2
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 1.2e-07 63.2 41 73.2
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 8.3e-06 57.0 34 79.4


User provided reference genes

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