Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1326.6 645 100.0
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1308.1 646 98.8
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1286.2 644 97.5
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1285.8 643 96.7
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1278.5 644 96.3
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1278.1 646 96.6
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1276.9 645 96.3
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1276.5 646 96.4
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1275.8 647 96.9
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1274.6 646 96.1
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1274.6 646 96.1
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1267.3 646 95.5
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1208.7 645 89.9
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1190.6 652 88.2
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1189.1 649 87.5
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1188.3 652 87.9
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1187.9 649 87.7
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1186.8 651 87.7
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1186.0 648 88.0
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1184.5 652 87.6
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1184.1 643 87.2
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1183.7 647 87.9
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1181.8 648 87.3
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1181.8 652 87.3
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1180.6 650 87.1
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1180.6 645 88.2
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1180.2 648 87.2
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 648 86.6
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1176.0 650 87.1
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1176.0 646 86.8
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1175.6 647 86.9
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 650 87.2
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1171.8 648 87.0
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1171.4 648 87.0
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1171.4 648 86.9
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1171.0 647 86.9
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1171.0 648 86.0
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 647 86.2
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1166.4 646 86.2
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1166.4 647 86.7
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1164.8 647 86.2
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1164.8 647 86.4
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1164.4 648 86.7
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1164.4 649 85.2
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1164.1 648 85.5
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1163.3 649 86.3
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1162.5 643 86.5
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1161.0 648 84.9
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1160.6 645 86.7
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1159.8 648 84.9
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1159.8 648 85.3
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1159.8 648 85.3
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1159.8 647 86.1
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1158.3 643 86.0
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1156.7 647 85.0
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1155.6 643 85.4
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1155.2 644 85.7
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 648 86.0
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 643 85.7
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1152.1 648 84.4
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1151.3 649 84.9
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1150.6 649 85.2
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1149.0 648 85.5
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1149.0 647 85.3
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1148.7 648 85.3
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1147.1 647 85.2
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1144.8 648 84.0
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1143.6 650 83.5
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1143.6 644 83.9
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1142.5 646 85.1
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1141.7 637 85.7
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1141.3 642 85.2
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1140.2 649 85.1
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1140.2 643 84.4
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1139.8 643 85.1
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1139.4 644 85.7
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1139.4 649 85.1
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1138.3 642 84.7
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1137.9 652 85.4
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1137.5 648 83.3
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1137.5 644 84.6
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1137.5 644 84.6
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1136.3 632 87.0
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1135.9 648 84.7
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1135.9 619 88.0
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1135.6 644 84.6
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1133.2 644 84.5
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1132.9 644 84.9
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1132.9 639 84.5
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1132.1 643 84.0
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1131.7 643 83.8
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1128.6 648 82.6
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1124.8 652 83.7
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1121.7 643 85.1
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1119.0 711 77.4
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1112.4 644 82.0
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1096.3 643 82.7
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1095.5 591 87.5
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1090.1 618 83.2
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1081.2 643 82.0
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1080.9 632 81.0
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1077.8 592 87.3
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 1.5e-310 1068.9 650 79.1
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 8.5e-306 1053.1 647 80.2
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 3.3e-302 1041.2 602 83.6
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 1.4e-300 1035.8 602 82.9
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 4.5e-299 1030.8 664 75.5
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 1.1e-297 1026.2 571 84.9
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 2.1e-296 1021.9 541 88.4
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 1.0e-295 1019.6 608 80.3
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 5.0e-290 1000.7 563 83.3
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 4.7e-288 994.2 553 83.9
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 1.8e-287 992.3 610 79.2
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 1.9e-252 875.9 475 86.7
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 9.3e-228 793.9 547 70.2
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 4.8e-200 701.8 389 87.1
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 1.6e-187 660.2 394 81.0
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 2.1e-187 659.8 581 58.2
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 8.3e-152 541.6 267 96.3
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 2.3e-125 453.8 551 47.4
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 2.5e-71 274.2 217 62.2
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 3.0e-69 267.3 125 96.0
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 2.4e-42 177.9 101 81.2
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 2.3e-40 171.4 97 82.5
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 7.3e-39 166.4 150 57.3
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 5.8e-36 156.8 150 58.0
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 4.4e-20 104.0 53 92.5
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 4.9e-19 100.5 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 1.5e-07 62.4 32 87.5


User provided reference genes

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