Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 4.3e-88 328.2 191 100.0
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 7.3e-80 300.8 186 86.6
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 1.0e-73 280.4 186 79.6
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 4.3e-72 275.0 186 81.2
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 1.5e-69 266.5 186 77.4
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 4.5e-69 265.0 190 76.8
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 1.9e-64 249.6 190 73.2
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 1.0e-57 227.3 190 70.0
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 1.8e-57 226.5 190 70.0
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 1.8e-57 226.5 190 70.0
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 1.8e-57 226.5 190 70.0
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 6.7e-57 224.6 190 69.5
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 9.6e-56 220.7 187 65.8
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 3.4e-53 212.2 145 79.3
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 6.1e-42 174.9 197 51.8
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.1e-40 170.6 197 49.2
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 1.9e-40 169.9 197 49.7
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 4.3e-40 168.7 199 53.3
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 9.7e-40 167.5 198 51.0
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.3e-39 167.2 197 49.2
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 3.7e-39 165.6 197 48.7
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 6.3e-39 164.9 198 50.5
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 8.2e-39 164.5 197 48.7
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.4e-38 162.9 197 48.2
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 2.4e-38 162.9 199 49.2
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 3.1e-38 162.5 201 49.8
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 3.1e-38 162.5 193 49.2
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 6.9e-38 161.4 195 49.7
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 6.9e-38 161.4 195 49.7
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 9.1e-38 161.0 194 48.5
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 9.1e-38 161.0 194 48.5
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 1.2e-37 160.6 201 48.3
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.5e-37 160.2 191 49.7
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 2.0e-37 159.8 188 51.6
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 2.0e-37 159.8 198 48.0
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 2.6e-37 159.5 196 49.5
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 5.9e-37 158.3 201 48.3
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 1.0e-36 157.5 200 47.5
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 1.7e-36 156.8 199 50.3
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 1.7e-36 156.8 193 48.2
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 2.2e-36 156.4 196 49.0
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 3.8e-36 155.6 188 51.6
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 5.0e-36 155.2 203 49.3
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 8.5e-36 154.5 186 51.1
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 8.5e-36 154.5 202 45.5
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 1.4e-35 153.7 199 48.2
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 3.2e-35 152.5 197 49.2
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 4.2e-35 152.1 194 47.9
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 4.2e-35 152.1 200 48.0
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 5.5e-35 151.8 187 47.6
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 5.5e-35 151.8 202 49.5
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 7.2e-35 151.4 150 55.3
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 9.4e-35 151.0 199 47.2
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 9.4e-35 151.0 199 48.2
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 1.2e-34 150.6 191 47.6
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 1.6e-34 150.2 200 47.5
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 1.6e-34 150.2 199 46.7
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 2.1e-34 149.8 146 56.2
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 2.1e-34 149.8 199 47.7
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 3.6e-34 149.1 190 46.3
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 3.6e-34 149.1 192 47.4
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 6.1e-34 148.3 203 46.3
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.0e-33 147.5 195 47.2
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.0e-33 147.5 199 48.2
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 1.4e-33 147.1 199 46.2
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 1.4e-33 147.1 203 45.8
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 2.3e-33 146.4 198 44.9
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 2.3e-33 146.4 195 47.7
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 3.0e-33 146.0 190 47.9
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 3.0e-33 146.0 199 45.2
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 3.0e-33 146.0 187 49.2
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 3.0e-33 146.0 166 51.8
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 3.9e-33 145.6 195 45.6
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 3.9e-33 145.6 197 46.7
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 3.9e-33 145.6 198 46.0
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 6.7e-33 144.8 196 44.9
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 8.8e-33 144.4 114 66.7
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 8.8e-33 144.4 198 44.9
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 8.8e-33 144.4 199 44.7
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.1e-32 144.1 151 53.6
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 1.5e-32 143.7 203 44.8
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 1.5e-32 143.7 201 45.8
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.0e-32 143.3 197 46.7
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 2.0e-32 143.3 201 46.8
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 2.6e-32 142.9 201 48.8
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 2.6e-32 142.9 142 52.1
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 3.3e-32 142.5 203 45.3
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 7.4e-32 141.4 179 49.2
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 7.4e-32 141.4 201 46.3
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.7e-31 140.2 197 46.2
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 1.7e-31 140.2 158 49.4
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 8.2e-31 137.9 148 51.4
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 2.4e-30 136.3 187 44.9
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 9.1e-30 134.4 146 52.7
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 1.2e-29 134.0 186 45.7
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 2.0e-29 133.3 240 40.0
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 1.0e-28 131.0 186 45.7
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.3e-28 130.6 194 43.8
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 1.7e-28 130.2 158 48.7
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 8.5e-28 127.9 142 52.8
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.2e-27 125.9 176 44.9
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 5.5e-27 125.2 125 52.0
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 5.7e-24 115.2 157 47.8
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 5.7e-24 115.2 133 48.9
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.4e-22 110.5 93 58.1
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 1.6e-21 107.1 210 38.1
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 4.5e-21 105.5 72 69.4
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 5.9e-21 105.1 67 74.6
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 1.3e-20 104.0 208 35.6
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 5.0e-20 102.1 62 77.4
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.1e-19 100.9 75 76.0
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 1.1e-19 100.9 189 36.0
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 1.4e-17 94.0 217 34.1
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.3e-17 93.2 188 37.2
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 2.8e-15 86.3 104 43.3
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 2.8e-15 86.3 185 34.1
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 4.8e-15 85.5 144 43.8
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 2.7e-13 79.7 143 36.4
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 1.0e-12 77.8 58 65.5
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.2e-12 76.6 149 36.9
C04p56940 Brassica napus HOM05D057202 ORTHO05D041615 2.5e-11 73.2 64 64.1
BolC4t27231H Brassica oleracea HOM05D057202 ORTHO05D041615 2.5e-11 73.2 64 64.1
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.6e-10 70.5 126 36.5
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 1.6e-10 70.5 76 50.0
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 8.0e-10 68.2 41 68.3
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 8.0e-10 68.2 48 66.7
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.0e-09 67.8 48 66.7
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.3e-09 66.6 48 64.6
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 2.3e-09 66.6 48 62.5
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.0e-09 66.2 90 45.6
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 8.8e-09 64.7 190 31.6
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.7e-07 60.5 43 62.8
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.7e-07 59.3 43 62.8


User provided reference genes

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