Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1419.1 748 100.0
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1156.7 748 81.7
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1156.0 748 82.0
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 748 81.6
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1145.2 746 81.4
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1144.8 748 80.5
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 746 81.2
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1142.5 746 81.2
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1142.5 746 81.2
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 746 81.1
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1137.9 746 81.0
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1132.9 748 80.7
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1100.5 749 76.6
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1090.5 790 74.9
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1075.1 749 75.2
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 5.1e-312 1073.5 744 74.3
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 2.8e-308 1061.6 747 72.6
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 4.7e-308 1060.8 750 74.8
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 6.2e-308 1060.4 751 72.6
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 8.9e-307 1056.6 736 73.2
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 2.6e-306 1055.0 740 73.0
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 5.8e-306 1053.9 747 72.2
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 1.3e-305 1052.7 740 73.0
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 2.2e-305 1052.0 736 72.7
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 3.7e-305 1051.2 741 73.0
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 3.7e-305 1051.2 748 71.9
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 8.4e-305 1050.0 741 72.5
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.4e-304 1049.3 747 72.0
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 1.4e-304 1049.3 740 72.6
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 3.2e-304 1048.1 740 72.4
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 4.1e-304 1047.7 740 72.4
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 7.1e-304 1047.0 736 73.1
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 7.1e-304 1047.0 736 73.1
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 7.1e-304 1047.0 736 73.1
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 2.7e-303 1045.0 747 72.0
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 4.6e-303 1044.3 737 73.3
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 6.0e-303 1043.9 743 72.3
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 6.0e-303 1043.9 744 72.0
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 1.7e-302 1042.3 744 71.9
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 2.3e-302 1042.0 736 72.6
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 8.6e-302 1040.0 746 71.2
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.1e-301 1039.6 751 71.8
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 1.9e-301 1038.9 744 71.9
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 3.3e-301 1038.1 736 71.9
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 5.6e-301 1037.3 736 72.0
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 6.2e-300 1033.9 741 71.9
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 6.2e-300 1033.9 744 71.6
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 6.2e-300 1033.9 740 72.2
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 6.2e-300 1033.9 744 71.6
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 8.1e-300 1033.5 744 71.2
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 3.1e-299 1031.6 745 71.0
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 8.9e-299 1030.0 746 70.6
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 8.9e-299 1030.0 745 71.3
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 8.9e-299 1030.0 735 71.8
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 7.6e-298 1026.9 700 73.9
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 9.9e-298 1026.5 764 69.9
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 1.7e-297 1025.8 746 70.2
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 2.2e-297 1025.4 737 72.0
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.2e-297 1025.4 746 70.6
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 8.4e-297 1023.5 665 81.5
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 1.1e-296 1023.1 700 74.1
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.9e-296 1022.3 751 70.8
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 9.3e-296 1020.0 736 70.7
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 1.2e-295 1019.6 700 73.7
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.6e-295 1019.2 741 70.9
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 6.0e-295 1017.3 736 71.1
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 7.8e-295 1016.9 744 70.7
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 1.7e-294 1015.8 748 69.5
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 2.3e-294 1015.4 736 70.9
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 3.9e-294 1014.6 748 69.4
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 5.1e-294 1014.2 736 71.5
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 6.6e-294 1013.8 735 70.5
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 3.3e-293 1011.5 763 68.8
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 5.6e-293 1010.7 743 70.5
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 5.6e-293 1010.7 736 70.9
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 1.3e-292 1009.6 737 71.4
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 6.2e-292 1007.3 744 69.6
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 4.0e-291 1004.6 749 68.4
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 9.0e-291 1003.4 764 68.1
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 3.4e-290 1001.5 740 70.4
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 4.4e-290 1001.1 700 72.0
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.3e-289 999.6 736 69.3
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 6.4e-289 997.3 736 69.2
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 6.4e-289 997.3 746 69.3
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 2.4e-288 995.3 747 69.1
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 7.9e-287 990.3 735 68.6
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 6.6e-286 987.3 736 68.3
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 8.7e-286 986.9 765 67.6
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 1.5e-285 986.1 740 68.8
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 1.5e-285 986.1 747 68.5
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 2.4e-283 978.8 782 65.5
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 1.5e-282 976.1 749 67.8
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.2e-281 972.2 742 66.3
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 2.4e-280 968.8 811 63.5
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 3.2e-280 968.4 718 69.5
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.3e-278 963.0 756 67.1
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.4e-275 953.0 698 70.5
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 1.2e-274 949.9 782 64.6
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 7.1e-272 940.6 736 65.2
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 2.5e-261 905.6 764 61.9
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 4.6e-255 884.8 742 60.8
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 4.6e-255 884.8 742 60.8
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 7.9e-255 884.0 617 71.5
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 7.4e-253 877.5 657 69.4
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 6.5e-249 864.4 714 60.9
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.1e-245 853.6 704 60.1
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.3e-243 844.7 610 68.9
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.0e-238 830.5 749 56.9
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.1e-232 810.4 715 60.8
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 9.4e-232 807.4 592 67.7
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.5e-229 800.0 580 69.7
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 3.4e-229 798.9 707 61.0
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 7.0e-227 791.2 615 65.9
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.2e-226 790.4 530 75.7
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 3.6e-207 725.7 741 51.1
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 8.0e-207 724.5 509 72.3
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 3.6e-191 672.5 741 47.5
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.4e-179 634.0 467 66.8
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.3e-169 600.1 476 68.1
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.0e-140 505.0 327 73.7
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 3.8e-140 503.1 742 39.4
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 3.2e-131 473.4 782 35.7
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 9.7e-120 435.3 305 70.2
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.6e-114 417.9 296 68.2
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 2.0e-112 411.0 355 59.2
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 5.7e-112 409.5 295 68.8
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.6e-101 374.8 259 71.4
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 1.0e-100 372.1 772 33.2
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 7.3e-99 365.9 279 63.8
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.1e-98 364.4 263 68.4
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.0e-97 360.1 248 74.2
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 9.2e-86 322.4 276 64.1
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.0e-76 290.8 192 70.3
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 7.6e-72 276.2 193 75.6
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 7.8e-69 266.2 241 59.8
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.2e-64 252.3 194 64.9
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 3.6e-58 230.7 192 67.7
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 6.2e-58 229.9 148 72.3
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 4.5e-56 223.8 148 66.2
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 6.7e-52 209.9 155 65.8
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 2.0e-48 198.4 226 52.7
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 1.3e-47 195.7 186 61.8
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.7e-47 195.3 489 27.8
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.0e-44 186.0 193 53.4
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.8e-42 177.9 122 76.2
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 6.2e-42 176.8 120 75.8
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 3.9e-36 157.5 111 74.8
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 6.7e-36 156.8 111 73.0
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 2.5e-35 154.8 101 72.3
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 9.0e-33 146.4 163 55.8
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 2.6e-24 118.2 96 63.5
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.0e-23 116.3 141 54.6
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.3e-23 115.9 84 69.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 2.5e-22 111.7 96 60.4
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 2.5e-22 111.7 96 60.4
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.7e-19 100.5 57 84.2
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.3e-18 99.4 69 63.8
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 4.1e-17 94.4 94 55.3
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 5.9e-16 90.5 54 79.6
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 5.9e-16 90.5 53 81.1
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.0e-15 89.7 52 82.7
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.8e-15 87.8 93 50.5
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.1e-14 86.3 93 52.7
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 5.5e-14 84.0 65 64.6
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 2.0e-11 75.5 68 55.9
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 5.7e-11 73.9 78 48.7
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 6.5e-07 60.5 40 75.0


User provided reference genes

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