Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1367.8 708 100.0
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1350.1 708 98.4
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1334.7 708 97.0
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1322.8 706 96.3
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1312.0 709 95.6
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1311.6 709 95.6
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1311.6 709 95.6
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1310.8 709 95.5
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1307.7 710 95.5
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1307.0 709 95.3
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1291.2 708 94.5
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1251.5 750 88.1
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1209.9 698 88.3
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1191.8 701 85.9
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1174.8 708 82.6
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1174.1 698 86.7
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1173.7 708 83.2
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1172.9 708 83.3
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1170.2 708 83.2
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1168.7 708 83.2
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1166.8 708 83.2
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1166.4 698 86.7
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1166.4 685 85.7
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1164.4 699 83.8
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 708 82.8
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 708 82.8
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1163.3 708 83.2
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1160.6 698 84.4
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1159.8 685 85.3
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1159.1 700 83.0
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1158.7 699 83.1
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1158.7 685 85.1
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1158.3 685 85.1
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1157.9 685 85.4
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1157.9 685 85.4
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1157.9 685 85.4
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 703 83.9
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1155.6 708 82.2
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1154.0 697 83.6
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1153.7 699 83.4
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1153.7 688 83.9
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 708 81.8
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 748 81.7
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1149.0 708 81.2
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1149.0 704 83.0
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1149.0 685 84.5
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1147.9 696 83.5
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1147.5 688 84.4
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1145.2 700 82.7
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1144.8 708 81.8
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1144.4 700 82.1
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1144.0 696 83.6
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1143.6 695 82.0
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1141.3 698 82.1
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1140.6 695 83.0
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1139.4 686 83.5
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1138.6 731 79.9
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1135.2 708 81.4
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1134.8 689 83.0
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 703 82.4
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 694 82.4
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1133.2 731 80.2
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1132.9 689 82.9
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1125.2 705 80.0
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1124.4 714 80.3
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1124.4 685 83.2
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1122.8 691 82.1
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1122.1 671 83.6
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1121.3 691 81.3
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1121.3 686 83.1
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1120.5 691 81.3
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 698 80.4
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1119.0 697 81.6
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1117.4 714 79.7
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1117.4 685 82.6
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1117.1 708 79.9
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1117.1 719 78.7
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1115.1 708 79.9
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1112.1 736 76.5
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1111.3 687 81.7
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1108.6 726 78.2
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1107.4 685 82.5
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1104.7 631 91.1
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1104.0 684 81.0
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1102.4 708 79.2
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1097.8 694 79.8
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1097.4 686 80.9
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1095.9 684 80.3
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1094.7 710 79.0
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1094.3 708 77.1
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1090.1 668 81.4
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1079.3 764 73.3
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1079.3 730 75.8
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.8e-312 1073.9 709 77.9
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.3e-310 1069.3 687 77.3
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 5.0e-307 1057.4 682 77.7
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.2e-305 1052.7 703 74.5
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.9e-304 1047.7 666 80.3
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 9.7e-303 1043.1 730 74.7
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 5.3e-293 1010.7 706 73.4
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 6.7e-280 967.2 591 81.4
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.1e-279 966.5 689 69.7
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.1e-279 966.5 689 69.7
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.7e-278 961.4 631 78.4
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.8e-272 942.6 704 65.9
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.1e-266 923.3 691 66.9
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 3.6e-265 918.3 692 66.6
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.6e-265 918.3 584 77.4
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.0e-256 888.6 554 80.5
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 4.0e-256 888.3 683 69.1
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.4e-253 879.8 566 76.1
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.7e-251 872.8 518 85.1
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 8.6e-251 870.5 589 74.7
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 9.8e-247 857.1 675 67.7
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.6e-233 813.1 491 83.3
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 9.6e-226 787.3 681 58.1
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 5.1e-211 738.4 675 54.8
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 6.2e-201 704.9 441 77.8
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 6.9e-192 674.9 447 79.2
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 2.1e-156 557.0 328 81.7
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.1e-152 544.7 712 43.0
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 1.3e-142 511.1 790 37.3
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.7e-129 467.6 280 82.1
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 8.1e-124 448.7 270 80.0
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 1.9e-120 437.6 269 80.3
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 7.8e-119 432.2 368 61.1
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 3.1e-115 420.2 747 36.3
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.3e-109 399.8 236 82.6
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 2.6e-106 390.6 253 75.1
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.4e-106 389.8 233 80.3
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.7e-103 380.6 259 76.8
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.1e-96 358.6 252 74.2
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.3e-77 293.5 180 76.1
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 7.6e-74 282.7 192 79.2
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 8.5e-73 279.3 215 67.4
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.0e-70 270.8 148 85.8
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 8.2e-68 262.7 195 68.2
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 3.1e-59 234.2 192 69.8
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 5.9e-58 229.9 155 65.2
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 2.0e-53 214.9 167 65.9
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 2.6e-53 214.5 156 67.9
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 3.7e-52 210.7 180 67.2
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 3.7e-52 210.7 214 57.5
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.0e-49 202.6 489 28.4
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.2e-45 189.1 119 81.5
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.3e-44 185.7 114 83.3
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 7.2e-40 169.9 127 74.8
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 1.2e-39 169.1 105 77.1
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 4.7e-39 167.2 111 80.2
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 2.0e-37 161.8 111 75.7
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.6e-34 152.1 139 66.2
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 7.7e-34 149.8 96 78.1
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 3.2e-32 144.4 96 76.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 3.2e-32 144.4 96 76.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.3e-24 117.9 99 62.6
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 3.4e-21 107.8 73 75.3
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 4.4e-21 107.5 63 79.4
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 6.4e-20 103.6 69 69.6
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 8.3e-20 103.2 57 86.0
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.1e-19 102.8 77 68.8
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.4e-19 102.4 59 83.1
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 9.2e-19 99.8 69 73.9
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.0e-17 94.0 94 52.1
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 3.6e-15 87.8 65 70.8
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 4.1e-11 74.3 78 48.7
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 7.0e-11 73.6 60 61.7
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 5.6e-08 63.9 40 80.0
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 2.8e-07 61.6 61 52.5
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.8e-06 58.9 38 73.7
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 8.9e-06 56.6 66 51.5


User provided reference genes

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