Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.3e-78 295.4 143 100.0
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.8e-44 182.2 146 67.1
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 6.3e-44 181.0 146 67.1
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 2.0e-42 176.0 146 64.4
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 1.1e-32 143.7 149 51.7
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.8e-27 126.3 117 60.7
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 4.1e-27 125.2 153 47.1
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 1.6e-26 123.2 155 46.5
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 1.0e-25 120.6 156 45.5
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 1.3e-25 120.2 155 45.8
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 3.0e-25 119.0 156 44.9
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 3.9e-25 118.6 150 48.0
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.5e-24 116.7 158 45.6
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 3.7e-20 102.1 147 42.2
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 1.4e-19 100.1 147 42.2
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.6e-18 96.7 145 42.1
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 2.1e-18 96.3 144 42.4
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 3.5e-18 95.5 112 48.2
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 4.6e-18 95.1 154 40.9
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 6.0e-18 94.7 148 39.2
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.0e-17 94.0 58 77.6
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 1.3e-17 93.6 145 39.3
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.7e-17 93.2 152 40.8
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 3.9e-17 92.0 148 38.5
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 3.9e-17 92.0 145 41.4
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 5.0e-17 91.7 148 37.8
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 6.6e-17 91.3 138 37.7
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 6.6e-17 91.3 151 38.4
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 6.6e-17 91.3 151 39.1
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 6.6e-17 91.3 146 38.4
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 8.6e-17 90.9 139 37.4
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 8.6e-17 90.9 144 38.9
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 8.6e-17 90.9 145 39.3
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 8.6e-17 90.9 148 37.8
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 8.6e-17 90.9 145 40.0
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 8.6e-17 90.9 145 40.0
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.1e-16 90.5 137 40.9
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 1.1e-16 90.5 143 40.6
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 1.5e-16 90.1 154 37.7
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.5e-16 90.1 149 39.6
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 1.5e-16 90.1 149 39.6
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 1.9e-16 89.7 145 39.3
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.9e-16 89.7 144 40.3
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 7.3e-16 87.8 144 38.9
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 9.5e-16 87.4 144 39.6
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 9.5e-16 87.4 143 37.8
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 9.5e-16 87.4 144 38.2
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 9.5e-16 87.4 144 38.2
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 1.2e-15 87.0 147 38.8
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 1.6e-15 86.7 144 38.2
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.6e-15 86.7 144 38.2
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.8e-15 85.9 144 38.9
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 2.8e-15 85.9 144 38.9
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 2.8e-15 85.9 144 38.9
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 2.8e-15 85.9 146 37.0
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 2.8e-15 85.9 144 38.2
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 6.2e-15 84.7 145 37.9
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 6.2e-15 84.7 144 37.5
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 8.1e-15 84.3 147 36.1
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.1e-14 84.0 144 38.2
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.1e-14 84.0 146 37.0
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.4e-14 83.6 147 35.4
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.4e-14 83.6 146 37.7
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.4e-14 83.6 142 35.9
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 3.1e-14 82.4 147 35.4
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 3.1e-14 82.4 144 35.4
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 3.1e-14 82.4 144 35.4
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 3.1e-14 82.4 145 36.6
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 3.1e-14 82.4 142 36.6
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 4.0e-14 82.0 146 37.0
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 8.9e-14 80.9 142 38.0
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 8.9e-14 80.9 146 34.9
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.5e-13 80.1 145 35.9
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.6e-13 79.3 144 37.5
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 3.4e-13 79.0 133 36.8
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 3.4e-13 79.0 143 38.5
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.4e-13 78.6 142 36.6
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.8e-13 78.2 142 35.2
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 7.5e-13 77.8 149 30.9
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 9.9e-13 77.4 142 38.7
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 9.9e-13 77.4 148 37.2
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 9.9e-13 77.4 143 34.3
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.3e-12 77.0 142 38.7
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.3e-12 77.0 146 37.7
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 2.9e-12 75.9 142 35.9
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 3.7e-12 75.5 132 37.9
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 3.7e-12 75.5 132 37.9
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.9e-12 75.1 142 35.2
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.9e-11 73.2 147 32.0
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 2.4e-11 72.8 147 32.0
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.2e-11 72.4 145 32.4
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 4.1e-11 72.0 144 31.9
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 5.4e-11 71.6 42 81.0
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 9.2e-11 70.9 143 33.6
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 1.2e-10 70.5 147 32.7
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 4.6e-10 68.6 149 34.9
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.1e-08 63.9 148 31.8
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.5e-08 63.5 134 35.1
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 2.5e-08 62.8 58 56.9
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.3e-08 62.4 153 31.4
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 3.3e-08 62.4 116 34.5
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 4.3e-08 62.0 150 32.0
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 5.6e-08 61.6 120 34.2
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 5.6e-08 61.6 149 31.5
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 7.3e-08 61.2 146 32.9
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 2.1e-07 59.7 150 32.7
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.1e-07 59.7 150 32.7
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 2.8e-07 59.3 56 55.4
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 3.6e-07 58.9 149 30.9
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 8.1e-07 57.8 142 31.0
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.4e-06 57.0 58 50.0
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.8e-06 56.6 150 33.3
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.8e-06 56.6 150 33.3
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 8.9e-06 54.3 45 62.2


User provided reference genes

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