Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 3.8e-296 1020.8 523 100.0
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 7.2e-287 989.9 523 96.4
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 1.5e-271 939.1 523 92.4
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 1.4e-269 932.6 526 91.8
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 2.3e-269 931.8 524 91.4
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 1.7e-267 925.6 522 91.4
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 8.2e-267 923.3 525 90.5
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 1.0e-264 916.4 525 90.3
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 3.8e-264 914.4 523 90.1
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 1.1e-263 912.9 523 90.1
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 1.5e-263 912.5 523 89.9
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 5.5e-263 910.6 500 93.2
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 2.8e-259 898.3 523 87.6
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 1.6e-230 802.7 500 81.4
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 5.2e-213 744.6 502 75.7
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 3.4e-212 741.9 504 74.8
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 3.4e-212 741.9 506 75.5
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 4.9e-211 738.0 504 74.8
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 8.4e-211 737.3 498 74.5
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 1.4e-210 736.5 508 71.9
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 1.2e-209 733.4 501 74.9
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 2.1e-209 732.6 501 74.3
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 3.5e-209 731.9 495 74.7
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 3.5e-209 731.9 506 73.7
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 4.6e-209 731.5 501 74.3
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 1.7e-208 729.6 508 72.4
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 3.0e-208 728.8 509 71.1
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 3.9e-208 728.4 499 74.3
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 3.9e-208 728.4 499 72.7
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 6.6e-208 727.6 501 74.5
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 1.9e-207 726.1 491 71.5
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 4.3e-207 724.9 481 75.7
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 5.6e-207 724.5 501 71.5
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 7.3e-207 724.2 491 73.9
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 9.6e-207 723.8 490 73.5
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 1.6e-206 723.0 498 70.9
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 1.4e-205 719.9 501 72.1
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 2.4e-205 719.2 503 72.8
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 2.4e-205 719.2 500 72.8
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 3.1e-205 718.8 504 72.4
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 3.1e-205 718.8 500 73.8
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 4.0e-205 718.4 496 73.2
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 4.0e-205 718.4 496 73.4
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 6.9e-205 717.6 497 72.8
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 6.9e-205 717.6 502 71.5
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 9.0e-205 717.2 495 73.1
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 1.2e-204 716.8 508 71.9
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 7.6e-204 714.1 514 71.0
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 7.6e-204 714.1 496 73.2
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 9.9e-204 713.8 503 72.4
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 9.9e-204 713.8 491 72.9
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 1.3e-203 713.4 492 73.4
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 1.3e-203 713.4 493 73.4
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 2.9e-203 712.2 492 73.6
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 4.9e-203 711.4 505 72.7
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 4.9e-203 711.4 519 69.7
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 6.4e-203 711.1 492 73.4
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 8.4e-203 710.7 496 73.0
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 1.4e-202 709.9 487 71.0
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 2.4e-202 709.1 503 72.0
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 3.2e-202 708.8 492 72.2
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 4.2e-202 708.4 512 70.9
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 4.2e-202 708.4 503 72.0
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 4.2e-202 708.4 496 72.4
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 4.2e-202 708.4 498 72.5
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 9.3e-202 707.2 490 72.9
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.2e-201 706.8 512 71.1
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 2.7e-201 705.7 503 72.6
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 6.0e-201 704.5 501 72.7
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 1.3e-200 703.4 488 70.3
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 2.3e-200 702.6 491 73.1
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 1.1e-199 700.3 502 70.7
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 1.5e-199 699.9 491 72.1
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 1.5e-199 699.9 507 71.8
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 5.6e-199 698.0 491 71.5
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 5.6e-199 698.0 513 70.0
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 1.3e-198 696.8 489 72.4
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.3e-198 696.8 542 67.5
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 2.1e-198 696.0 502 70.7
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.4e-197 693.3 490 71.2
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 2.4e-197 692.6 491 71.5
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 4.0e-197 691.8 463 75.4
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.4e-196 688.7 525 69.0
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 3.8e-195 685.3 490 70.4
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 1.1e-194 683.7 484 71.7
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.1e-194 683.7 490 71.2
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 1.0e-192 677.2 508 68.1
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 2.3e-192 676.0 490 69.8
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 2.8e-190 669.1 492 69.5
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 1.4e-189 666.8 491 68.2
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.4e-189 666.8 472 71.2
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 8.4e-187 657.5 437 74.4
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 1.4e-186 656.8 567 63.0
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 6.3e-182 641.3 501 63.7
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 1.5e-180 636.7 504 66.1
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 1.6e-169 600.1 500 60.2
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.8e-168 596.7 527 59.8
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 3.0e-168 595.9 627 53.1
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 2.2e-163 579.7 464 65.5
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.6e-161 573.5 486 61.7
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 1.4e-160 570.5 500 60.0
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 3.0e-160 569.3 504 58.7
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.0e-159 566.6 385 73.5
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 2.8e-142 509.6 488 56.1
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 1.6e-132 477.2 409 59.7
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.8e-129 466.5 333 72.7
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 6.8e-120 435.3 368 65.5
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 1.2e-108 397.9 557 43.3
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 1.2e-105 387.9 265 72.1
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 2.8e-97 360.1 259 69.5
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 8.2e-73 278.9 369 44.7
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 1.1e-72 278.5 280 56.4
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 6.5e-70 269.2 175 73.7
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 8.4e-70 268.9 189 68.3
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 4.2e-69 266.5 459 39.7
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 2.6e-63 247.3 157 75.8
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 2.0e-58 231.1 147 76.2
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.4e-56 224.9 134 76.1
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 9.1e-56 222.2 255 47.5
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 7.0e-48 196.1 121 77.7
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 9.4e-45 185.7 136 75.7
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 6.1e-44 183.0 154 61.0
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 1.0e-43 182.2 139 69.8
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.0e-35 155.6 296 38.2
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.4e-35 155.2 156 53.8
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.8e-33 147.5 172 51.2
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 1.2e-31 142.1 217 40.1
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 8.5e-30 136.0 97 70.1
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 3.2e-29 134.0 99 71.7
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 3.2e-29 134.0 99 71.7
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 2.7e-28 131.0 133 58.6
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 1.6e-23 115.2 117 51.3
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 4.0e-19 100.5 62 79.0
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 5.2e-19 100.1 146 41.8
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 6.3e-17 93.2 62 79.0
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 7.0e-16 89.7 228 31.6
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.7e-15 87.8 69 68.1
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 1.0e-11 75.9 74 54.1
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.8e-10 70.1 49 75.5
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 1.2e-07 62.4 102 36.3
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 1.2e-07 62.4 102 36.3
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 1.2e-07 62.4 72 47.2
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 6.0e-07 60.1 102 35.3
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 7.8e-07 59.7 102 36.3
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 1.0e-06 59.3 102 35.3
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 1.0e-06 59.3 110 32.7
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 1.0e-06 59.3 102 34.3
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 1.3e-06 58.9 110 32.7
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 1.3e-06 58.9 102 34.3
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 1.7e-06 58.5 102 34.3
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 1.7e-06 58.5 102 34.3
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 2.3e-06 58.2 110 32.7
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 2.3e-06 58.2 109 32.1
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 5.0e-06 57.0 90 38.9
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 5.0e-06 57.0 102 34.3
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 5.0e-06 57.0 90 36.7
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 5.0e-06 57.0 90 36.7
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 5.0e-06 57.0 102 33.3
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 6.6e-06 56.6 90 37.8
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 8.6e-06 56.2 102 33.3


User provided reference genes

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