Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2836.2 1465 100.0
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2720.3 1466 96.1
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2639.0 1465 92.7
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2632.1 1465 92.2
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2614.0 1465 92.2
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2586.6 1465 90.4
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2578.1 1465 90.6
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2574.3 1475 90.3
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2572.7 1465 90.5
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2570.0 1475 90.0
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2565.8 1466 90.5
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2564.6 1473 90.3
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2562.7 1476 90.0
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2561.2 1474 90.1
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2559.6 1477 89.7
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2555.4 1467 89.7
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2546.2 1475 89.4
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 2365.1 1441 84.7
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2365.1 1474 82.2
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2280.8 1345 88.7
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2225.7 1491 76.9
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2189.8 1491 75.6
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2188.7 1492 75.5
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2186.8 1491 75.4
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2186.0 1493 75.8
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2183.3 1490 75.9
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2178.3 1491 75.4
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2173.7 1495 75.2
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2155.9 1490 74.4
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2155.6 1496 74.5
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2148.2 1489 73.7
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2142.5 1496 73.8
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2140.9 1491 74.1
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2140.5 1492 73.7
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2139.8 1489 73.7
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2135.9 1490 73.6
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2135.1 1489 74.0
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2134.0 1493 73.6
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2127.4 1485 73.6
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2126.7 1488 73.4
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2124.7 1488 73.4
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2124.0 1489 73.7
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2119.4 1494 73.1
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2118.6 1484 73.6
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2118.2 1490 72.8
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2115.5 1490 73.3
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2105.9 1485 73.3
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2100.9 1483 72.8
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2100.1 1490 72.6
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2099.7 1490 72.3
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2098.9 1479 72.4
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2093.9 1495 72.4
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2092.4 1494 72.0
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2078.9 1489 71.9
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2076.2 1492 71.6
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2074.7 1492 71.5
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2073.9 1492 71.5
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2073.5 1492 71.6
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2067.4 1492 71.4
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2066.2 1486 71.0
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2066.2 1490 71.5
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2058.5 1487 71.3
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2058.1 1527 70.1
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2056.6 1441 73.8
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2056.2 1492 70.8
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2051.2 1545 69.3
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2043.5 1491 71.0
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2042.3 1488 70.5
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2041.5 1529 69.3
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2040.0 1484 71.3
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2038.5 1492 70.7
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2035.4 1491 70.6
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2018.8 1483 70.7
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2018.8 1487 69.7
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2017.3 1484 69.4
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2015.4 1492 70.4
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2014.2 1560 67.6
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2008.8 1491 69.2
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2004.9 1488 69.4
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 1997.6 1492 69.6
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 1983.8 1488 68.8
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 1979.9 1488 69.0
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 1976.4 1543 67.2
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1967.2 1488 68.3
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1959.5 1477 68.1
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1945.2 1488 67.6
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1941.4 1483 68.4
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1937.9 1483 68.1
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1921.4 1476 67.3
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1917.9 1492 67.2
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1886.3 1474 67.4
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1881.7 1570 63.8
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1868.2 1503 65.7
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1859.3 1302 74.7
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1845.5 1304 73.7
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1835.5 1304 73.3
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1812.7 1276 73.3
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1808.9 1468 64.4
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1798.9 1589 62.3
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1744.9 1303 70.1
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1728.8 1209 73.8
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1723.4 1482 60.5
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1687.2 1391 66.4
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1671.4 1428 62.7
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1661.4 1438 62.1
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1642.9 1435 59.6
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1544.6 1517 55.4
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1531.9 1525 54.7
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1522.3 988 78.2
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1400.2 1405 56.6
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1315.1 1083 65.7
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1313.5 1211 57.2
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1270.8 1297 54.0
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1270.4 1363 53.2
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1221.8 1363 51.8
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 1.1e-305 1053.9 1263 50.8
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.5e-297 1026.2 735 74.1
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 3.5e-291 1005.7 750 69.2
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 9.6e-289 997.7 849 61.4
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 1.7e-253 880.6 771 62.1
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 6.8e-242 842.0 886 56.2
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 2.2e-232 810.4 910 52.9
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 4.7e-227 792.7 579 68.4
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 5.2e-226 789.3 711 59.2
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.0e-205 720.3 470 80.9
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 1.4e-199 701.4 612 60.6
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.1e-183 648.7 600 58.7
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 4.5e-169 600.1 362 79.8
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 9.7e-164 582.4 740 45.9
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 7.4e-156 556.2 435 69.2
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 1.2e-145 522.3 477 62.3
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 2.2e-136 491.5 548 53.1
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.9e-115 421.4 753 39.0
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 5.2e-101 374.0 230 85.2
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 3.4e-100 371.3 1811 24.7
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.7e-89 335.1 445 45.6
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 8.6e-88 330.1 1547 26.8
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 1.5e-84 319.3 214 74.3
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 9.9e-84 316.6 1601 24.5
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 3.8e-75 288.1 335 51.9
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 7.1e-74 283.9 225 63.1
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 5.3e-69 267.7 155 79.4
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 2.2e-67 262.3 241 59.3
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 6.4e-67 260.8 152 77.6
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 1.1e-61 243.4 195 61.0
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 5.3e-61 241.1 268 51.1
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 6.3e-46 191.0 102 87.3
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 4.5e-44 184.9 155 63.9
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 7.7e-44 184.1 1355 23.2
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 9.4e-42 177.2 186 53.8
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.6e-41 174.9 336 39.0
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 2.0e-36 159.5 185 51.4
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 7.2e-34 151.0 218 47.2
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 1.0e-32 147.1 130 58.5
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 1.4e-32 146.7 107 71.0
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 3.3e-31 142.1 102 71.6
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 7.2e-26 124.4 131 50.4
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 2.7e-25 122.5 101 64.4
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 3.7e-22 112.1 55 89.1
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 3.5e-20 105.5 64 76.6
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.5e-20 105.1 135 49.6
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 2.2e-19 102.8 67 70.1
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.5e-15 90.1 110 52.7
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 4.4e-15 88.6 69 63.8
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.4e-13 83.6 53 71.7
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.4e-13 83.6 53 71.7
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 4.7e-09 68.6 50 64.0
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 6.1e-09 68.2 35 82.9
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 4.9e-06 58.5 63 50.8


User provided reference genes

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