Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G42910 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 7.6e-195 683.7 363 100.0
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.3e-146 522.7 364 80.2
AT4G11250 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 8.0e-128 461.1 364 73.4
Sp2g28440 Schrenkiella parvula HOM05D006887 ORTHO05D004325 9.9e-94 347.8 360 63.1
Carub.0008s2621 Capsella rubella HOM05D006887 ORTHO05D004325 5.6e-81 305.4 282 63.5
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 8.4e-77 291.6 338 55.6
BcaC03g18328 Brassica carinata HOM05D006887 ORTHO05D004325 5.5e-76 288.9 371 52.6
A02p43880 Brassica napus HOM05D006887 ORTHO05D004325 5.5e-76 288.9 365 53.2
BraA02t09311Z Brassica rapa HOM05D006887 ORTHO05D004325 5.5e-76 288.9 365 53.2
C02p64040 Brassica napus HOM05D006887 ORTHO05D004325 2.7e-75 286.6 371 52.3
BolC2t12470H Brassica oleracea HOM05D006887 ORTHO05D004325 2.7e-75 286.6 371 52.3
AL7G49930 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 5.0e-69 265.8 412 45.6
Carub.0003s3325 Capsella rubella HOM05D006887 ORTHO05D004325 3.4e-62 243.0 368 48.4
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 4.7e-59 232.6 310 48.7
Carub.0007s3559 Capsella rubella HOM05D006887 ORTHO05D004325 7.9e-59 231.9 370 50.5
AL7G50550 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 3.9e-58 229.6 285 50.9
Carub.0007s3594 Capsella rubella HOM05D006887 ORTHO05D004325 2.0e-57 227.3 372 46.2
AL7G50480 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 2.6e-57 226.9 273 52.4
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 7.4e-57 225.3 404 44.1
AT5G38740 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.1e-55 219.9 329 47.1
Carub.0007s3561 Capsella rubella HOM05D006887 ORTHO05D004325 5.9e-54 215.7 362 45.0
AT5G41200 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.0e-53 214.9 292 49.7
AT5G40120 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.6e-51 206.5 250 56.0
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 9.7e-49 198.4 205 61.5
AT5G40220 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.7e-48 197.6 276 48.9
CARHR058360 Cardamine hirsuta HOM05D006887 ORTHO05D004325 9.1e-47 191.8 249 57.0
AT5G39750 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.3e-45 188.0 311 44.1
A04p12980 Brassica napus HOM05D006887 ORTHO05D004325 5.5e-44 182.6 339 41.3
BcaB06g27414 Brassica carinata HOM05D006887 ORTHO05D004325 7.2e-44 182.2 353 43.1
BcaB06g27394 Brassica carinata HOM05D006887 ORTHO05D004325 4.7e-43 179.5 343 42.3
BraA04t16961Z Brassica rapa HOM05D006887 ORTHO05D004325 3.0e-42 176.8 370 40.8
BcaB08g34810 Brassica carinata HOM05D006887 ORTHO05D004325 2.6e-41 173.7 361 41.6
A04p13000 Brassica napus HOM05D006887 ORTHO05D004325 3.3e-41 173.3 360 41.4
A04p12860 Brassica napus HOM05D006887 ORTHO05D004325 1.1e-39 168.3 368 40.2
BraA04t16949Z Brassica rapa HOM05D006887 ORTHO05D004325 3.1e-39 166.8 366 39.9
CARHR279290 Cardamine hirsuta HOM05D006887 ORTHO05D004325 5.3e-39 166.0 291 45.7
AT5G39810 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.5e-38 163.3 309 41.4
BolC4t26255H Brassica oleracea HOM05D006887 ORTHO05D004325 7.2e-36 155.6 342 39.8
C04p46390 Brassica napus HOM05D006887 ORTHO05D004325 2.3e-34 150.6 334 37.7
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 2.3e-34 150.6 253 42.7
BcaB06g27671 Brassica carinata HOM05D006887 ORTHO05D004325 2.0e-33 147.5 344 36.9
Thhalv10028281m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 2.0e-33 147.5 230 47.0
Carub.0003s1843 Capsella rubella HOM05D006887 ORTHO05D004325 5.7e-33 146.0 355 36.1
BcaB06g27442 Brassica carinata HOM05D006887 ORTHO05D004325 1.7e-32 144.4 374 36.9
BraA04t16959Z Brassica rapa HOM05D006887 ORTHO05D004325 1.7e-32 144.4 343 38.2
C04p46750 Brassica napus HOM05D006887 ORTHO05D004325 2.8e-32 143.7 289 39.8
BolC4t26262H Brassica oleracea HOM05D006887 ORTHO05D004325 6.3e-32 142.5 359 39.0
C04p46670 Brassica napus HOM05D006887 ORTHO05D004325 8.3e-32 142.1 290 39.0
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 2.4e-31 140.6 289 39.1
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 9.1e-31 138.7 323 35.9
AT3G18650 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.2e-30 138.3 203 44.3
BraA05t21939Z Brassica rapa HOM05D006887 ORTHO05D004325 1.2e-30 138.3 253 42.7
BolC4t26260H Brassica oleracea HOM05D006887 ORTHO05D004325 1.0e-29 135.2 346 37.0
BcaC05g28586 Brassica carinata HOM05D006887 ORTHO05D004325 1.7e-29 134.4 320 38.8
BolC5t33421H Brassica oleracea HOM05D006887 ORTHO05D004325 2.3e-29 134.0 320 39.4
BcaB06g27392 Brassica carinata HOM05D008478 ORTHO05D000740 6.6e-29 132.5 298 38.6
AT5G37415 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 8.6e-29 132.1 163 50.3
BcaB06g25916 Brassica carinata HOM05D006887 ORTHO05D004325 1.1e-28 131.7 267 40.8
CARHR157630 Cardamine hirsuta HOM05D006887 ORTHO05D004325 3.3e-28 130.2 173 46.2
BcaC01g03686 Brassica carinata HOM05D006887 ORTHO05D004325 4.2e-28 129.8 340 35.6
C03p49630 Brassica napus HOM05D006887 ORTHO05D004325 4.2e-28 129.8 340 35.6
AL3G31960 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 3.6e-27 126.7 196 45.4
BcaB06g27670 Brassica carinata HOM05D006887 ORTHO05D004325 1.0e-26 125.2 334 36.2
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 2.3e-26 124.0 295 36.9
BcaC09g48822 Brassica carinata HOM05D006887 ORTHO05D004325 2.4e-23 114.0 301 34.2
C01p45590 Brassica napus HOM05D006887 ORTHO05D004325 2.4e-23 114.0 301 34.2
BolC1t04520H Brassica oleracea HOM05D006887 ORTHO05D004325 2.4e-23 114.0 301 34.2
A01p35810 Brassica napus HOM05D006887 ORTHO05D004325 9.2e-23 112.1 207 39.6
CARHR283740 Cardamine hirsuta HOM05D006887 ORTHO05D004325 9.2e-23 112.1 194 42.8
BraA01t03660Z Brassica rapa HOM05D006887 ORTHO05D004325 2.3e-21 107.5 156 45.5
Carub.0007s3592 Capsella rubella HOM05D006887 ORTHO05D004325 5.6e-20 102.8 143 49.0
BcaB06g27440 Brassica carinata HOM05D006887 ORTHO05D004325 2.0e-17 94.4 84 60.7
Thhalv10022126m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 2.0e-17 94.4 259 36.7
CARHR262050 Cardamine hirsuta HOM05D006887 ORTHO05D004325 9.8e-17 92.0 62 75.8
Thhalv10002808m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 3.7e-16 90.1 258 32.9
Carub.0006s2523 Capsella rubella HOM05D007946 ORTHO05D004325 1.9e-15 87.8 241 32.8
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 4.1e-15 86.7 293 28.7
THA.LOC104810872 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 7.0e-15 85.9 181 34.3
Carub.0006s2465 Capsella rubella HOM05D007946 ORTHO05D004325 2.0e-14 84.3 226 33.6
A09p48100 Brassica napus HOM05D007946 ORTHO05D004325 1.0e-13 82.0 221 32.1
THA.LOC109116041 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.0e-13 82.0 188 34.0
THA.LOC104804829 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.7e-13 81.3 211 33.6
AL6G40080 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 6.6e-13 79.3 227 32.6
THA.LOC109116042 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 6.6e-13 79.3 156 37.2
AL6G38960 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 8.6e-13 79.0 230 32.6
BraA04t16923Z Brassica rapa HOM05D006887 ORTHO05D004325 2.5e-12 77.4 195 37.4
AL6G40090 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 3.3e-12 77.0 231 32.5
AL6G38970 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 4.3e-12 76.6 233 32.2
CARHR186490 Cardamine hirsuta HOM05D007946 ORTHO05D004325 4.3e-12 76.6 81 53.1
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 4.3e-12 76.6 152 34.9
CARHR112470 Cardamine hirsuta HOM05D006887 ORTHO05D004325 9.5e-12 75.5 198 36.4
Aa31LG8G6760 Aethionema arabicum HOM05D006887 ORTHO05D004325 1.2e-11 75.1 221 28.5
CARHR186690 Cardamine hirsuta HOM05D007946 ORTHO05D004325 1.2e-11 75.1 81 53.1
Thhalv10005452m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.2e-11 75.1 180 33.3
AT5G26950 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 8.0e-11 72.4 264 28.8
Thhalv10005435m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 8.0e-11 72.4 320 28.1
A09p32540 Brassica napus HOM05D007946 ORTHO05D004325 1.1e-10 72.0 268 31.0
AT5G27050 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.8e-10 71.2 67 59.7
BcaB01g00130 Brassica carinata HOM05D007946 ORTHO05D004325 1.8e-10 71.2 273 27.1
C08p30340 Brassica napus HOM05D007946 ORTHO05D004325 3.1e-10 70.5 270 30.4
Sp5g22080 Schrenkiella parvula HOM05D007946 ORTHO05D004325 3.1e-10 70.5 220 30.5
BolC8t50656H Brassica oleracea HOM05D007946 ORTHO05D004325 5.2e-10 69.7 272 30.1
BraA09t38796Z Brassica rapa HOM05D007946 ORTHO05D004325 8.9e-10 68.9 268 31.0
AT5G27580 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.2e-09 68.6 224 30.8
AT5G26865 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 2.0e-09 67.8 137 38.0
AT5G27070 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 2.6e-09 67.4 261 28.0
BcaNung06357 Brassica carinata HOM05D007946 ORTHO05D004325 4.4e-09 66.6 193 32.1
BolC6t35593H Brassica oleracea HOM05D007946 ORTHO05D004325 4.4e-09 66.6 193 32.1
AT5G27944 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.7e-08 64.7 249 27.7
C08p30320 Brassica napus HOM05D007946 ORTHO05D004325 2.2e-08 64.3 232 29.7
ATR0605G195 Amborella trichopoda HOM05D000307 ORTHO05D000166 2.9e-08 63.9 133 30.1
BraA06t23637Z Brassica rapa HOM05D007946 ORTHO05D004325 3.7e-08 63.5 263 29.3
C06p03120 Brassica napus HOM05D007946 ORTHO05D004325 4.9e-08 63.2 264 27.3
BolC6t35430H Brassica oleracea HOM05D007946 ORTHO05D004325 4.9e-08 63.2 264 27.3
BolC6t35452H Brassica oleracea HOM05D007946 ORTHO05D004325 4.9e-08 63.2 243 30.9
BcaC08g43051 Brassica carinata HOM05D007946 ORTHO05D004325 8.3e-08 62.4 234 29.9
ATR0626G033 Amborella trichopoda HOM05D000307 ORTHO05D000166 1.9e-07 61.2 169 27.2
AT5G40070 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.9e-07 61.2 222 34.7
BcaC08g46035 Brassica carinata HOM05D007946 ORTHO05D004325 2.4e-07 60.8 282 28.4
Haze_14940 Corylus avellana HOM05D006887 ORTHO05D009969 2.4e-07 60.8 165 28.5
A06p04330 Brassica napus HOM05D007946 ORTHO05D004325 3.2e-07 60.5 270 29.6
Aa31LG8G6650 Aethionema arabicum HOM05D006887 ORTHO05D004325 5.4e-07 59.7 207 30.9
ATR0075G005 Amborella trichopoda HOM05D006887 ORTHO05D004325 5.4e-07 59.7 49 59.2
AT5G27090 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 5.4e-07 59.7 174 33.3
Sp1g35160 Schrenkiella parvula HOM05D007946 ORTHO05D004325 5.4e-07 59.7 241 30.3
A08p14850 Brassica napus HOM05D007946 ORTHO05D004325 7.0e-07 59.3 267 29.2
Aa31LG11G7790 Aethionema arabicum HOM05D006887 ORTHO05D004325 9.2e-07 58.9 81 43.2
THA.LOC104801949 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 9.2e-07 58.9 83 39.8
THA.LOC104801951 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 9.2e-07 58.9 83 39.8
THA.LOC104825360 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 9.2e-07 58.9 83 39.8
BcaB07g33730 Brassica carinata HOM05D007946 ORTHO05D004325 1.2e-06 58.5 265 27.2
BcaB07g33784 Brassica carinata HOM05D007946 ORTHO05D004325 1.2e-06 58.5 265 27.2
BcaC07g39831 Brassica carinata HOM05D007946 ORTHO05D004325 1.2e-06 58.5 220 28.6
PGSC0003DMG400027886 Solanum tuberosum HOM05D000307 ORTHO05D000166 2.1e-06 57.8 151 32.5
TAR365G0201 Trochodendron aralioides HOM05D000307 ORTHO05D000166 2.1e-06 57.8 120 30.0
BcaB03g15376 Brassica carinata HOM05D007946 ORTHO05D004325 2.7e-06 57.4 231 28.1
BcaB07g33736 Brassica carinata HOM05D007946 ORTHO05D004325 2.7e-06 57.4 101 40.6
BcaB04g17058 Brassica carinata HOM05D007946 ORTHO05D004325 3.5e-06 57.0 231 26.8
Cfa015195 Carpinus fangiana HOM05D006887 ORTHO05D009969 3.5e-06 57.0 49 55.1
Haze_01459 Corylus avellana HOM05D006887 ORTHO05D009969 3.5e-06 57.0 49 55.1
Oeu061767.1 Olea europaea HOM05D000307 ORTHO05D000166 3.5e-06 57.0 200 26.0
A07p32380 Brassica napus HOM05D007946 ORTHO05D004325 4.6e-06 56.6 255 28.2
A09p32530 Brassica napus HOM05D007946 ORTHO05D004325 4.6e-06 56.6 292 27.7
BraA07t30861Z Brassica rapa HOM05D007946 ORTHO05D004325 4.6e-06 56.6 255 28.2
Aa31LG8G6660 Aethionema arabicum HOM05D006887 ORTHO05D004325 6.0e-06 56.2 166 32.5
Actinidia23430 Actinidia chinensis HOM05D006887 ORTHO05D009969 7.8e-06 55.8 64 42.2
BraA09t38795Z Brassica rapa HOM05D007946 ORTHO05D004325 7.8e-06 55.8 292 28.1
CSS0047056 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 7.8e-06 55.8 257 22.2


User provided reference genes

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