Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 1.4e-173 612.8 306 100.0
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 2.0e-148 529.3 309 87.1
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 4.7e-129 464.9 310 78.1
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 5.7e-127 458.0 312 77.2
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 5.2e-120 434.9 320 70.9
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 7.3e-114 414.5 330 67.0
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 3.6e-105 385.6 316 66.1
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 6.2e-105 384.8 315 65.1
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 1.4e-104 383.6 315 65.7
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 2.3e-104 382.9 315 64.8
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 1.5e-103 380.2 315 64.1
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 1.2e-100 370.5 315 63.2
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 3.0e-75 286.2 311 55.6
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 7.4e-74 281.6 309 53.7
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 1.3e-73 280.8 308 53.9
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 1.3e-73 280.8 308 53.6
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 2.1e-73 280.0 311 53.7
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 1.6e-65 253.8 307 51.5
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 8.2e-49 198.4 317 41.3
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.6e-34 150.2 223 39.9
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 1.8e-32 144.1 244 38.9
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 2.0e-31 140.6 266 36.8
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 2.0e-31 140.6 202 41.1
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 5.9e-31 139.0 252 36.1
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 1.0e-30 138.3 251 36.3
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 2.2e-30 137.1 255 35.3
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 8.5e-30 135.2 156 51.9
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 8.5e-30 135.2 156 51.9
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.5e-30 135.2 255 36.1
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 1.5e-29 134.4 156 51.9
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 3.2e-29 133.3 251 37.1
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 9.4e-29 131.7 230 35.2
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 2.7e-28 130.2 228 38.6
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 3.6e-28 129.8 219 40.2
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 4.7e-28 129.4 403 28.3
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.4e-27 127.9 234 34.2
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 6.8e-27 125.6 240 37.9
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.2e-26 124.8 235 34.9
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 4.4e-26 122.9 235 33.6
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 7.5e-26 122.1 285 33.0
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 1.3e-25 121.3 244 32.8
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 2.2e-25 120.6 391 28.1
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 2.2e-25 120.6 245 32.2
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 4.8e-25 119.4 241 32.8
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 4.8e-25 119.4 211 35.1
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 8.3e-25 118.6 245 32.2
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 1.1e-24 118.2 246 34.6
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.4e-24 117.1 244 34.8
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 2.4e-24 117.1 233 31.8
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 9.1e-24 115.2 364 31.0
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 2.0e-23 114.0 228 36.0
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 5.9e-23 112.5 237 33.3
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 7.7e-23 112.1 214 34.1
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 1.0e-22 111.7 314 29.9
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 1.3e-22 111.3 234 35.0
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 2.2e-22 110.5 314 29.9
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 1.1e-21 108.2 217 34.6
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 2.5e-21 107.1 205 34.1
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 2.5e-21 107.1 307 28.7
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 2.5e-21 107.1 150 40.7
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 1.2e-20 104.8 224 34.4
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.6e-20 104.4 252 31.3
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 1.6e-20 104.4 257 31.5
BcaB05g22585 Brassica carinata HOM05D006496 ORTHO05D008390 1.0e-19 101.7 274 32.5
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 1.0e-19 101.7 141 41.8
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.0e-19 101.7 348 29.3
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.0e-19 101.7 179 37.4
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 1.0e-19 101.7 207 36.2
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.8e-19 100.9 302 27.2
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 4.0e-19 99.8 171 39.8
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 4.0e-19 99.8 133 42.9
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 5.2e-19 99.4 131 46.6
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 8.8e-19 98.6 267 28.5
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 1.5e-18 97.8 168 37.5
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 1.5e-18 97.8 258 29.1
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 2.0e-18 97.4 250 30.0
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 4.4e-18 96.3 332 29.8
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.7e-18 95.9 315 28.9
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 1.3e-17 94.7 250 28.0
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 6.3e-17 92.4 332 28.6
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 4.1e-16 89.7 153 39.9
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 5.4e-16 89.4 280 29.6
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 7.0e-16 89.0 146 37.7
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 9.1e-16 88.6 221 32.6
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 9.1e-16 88.6 282 28.4
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 2.7e-15 87.0 132 42.4
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 4.5e-15 86.3 147 32.0
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 8.6e-14 82.0 293 26.6
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 2.1e-12 77.4 137 35.0
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 3.0e-11 73.6 164 29.9
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 4.0e-11 73.2 109 37.6
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 4.0e-11 73.2 158 33.5
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.2e-10 71.6 127 33.1
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 2.0e-10 70.9 133 33.8
FvH4_6g13651 Fragaria vesca HOM05D022761 ORTHO05D022494 4.4e-10 69.7 133 31.6
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 4.4e-10 69.7 124 34.7
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 5.7e-10 69.3 203 26.1
FAN14G3185 Fragaria x ananassa HOM05D022761 ORTHO05D022494 9.8e-10 68.6 133 31.6
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 9.8e-10 68.6 223 28.7
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 1.3e-09 68.2 101 38.6
FAN09G4791 Fragaria x ananassa HOM05D004190 ORTHO05D022494 1.7e-09 67.8 131 32.1
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 1.7e-09 67.8 162 29.6
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.2e-09 67.4 49 61.2
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 4.9e-09 66.2 270 23.7
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 6.3e-09 65.9 138 31.9
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 6.3e-09 65.9 206 28.2
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.1e-08 65.1 109 33.9
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.1e-08 65.1 139 32.4
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.1e-08 65.1 63 52.4
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 1.4e-08 64.7 201 27.4
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 1.8e-08 64.3 58 51.7
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 2.4e-08 63.9 44 63.6
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 5.4e-08 62.8 144 29.9
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 7.0e-08 62.4 79 44.3
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 9.2e-08 62.0 119 31.1
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.2e-07 61.6 84 38.1
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 1.2e-07 61.6 122 36.1
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 1.2e-07 61.6 58 51.7
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.0e-07 60.8 138 30.4
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 2.0e-07 60.8 45 60.0
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 2.7e-07 60.5 139 29.5
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.7e-07 60.5 49 57.1
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 3.5e-07 60.1 142 27.5
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 3.5e-07 60.1 114 36.8
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 4.6e-07 59.7 131 30.5
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.6e-07 59.7 196 29.1
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 4.6e-07 59.7 76 44.7
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 5.9e-07 59.3 138 29.7
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 5.9e-07 59.3 157 28.7
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 5.9e-07 59.3 165 26.1
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 7.8e-07 58.9 145 33.1
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 1.0e-06 58.5 141 29.8
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 1.0e-06 58.5 147 27.9
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 1.0e-06 58.5 131 29.8
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.0e-06 58.5 129 32.6
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 1.3e-06 58.2 127 33.1
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.3e-06 58.2 215 27.9
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 1.7e-06 57.8 48 62.5
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 1.7e-06 57.8 117 32.5
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 1.7e-06 57.8 127 33.9
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 2.3e-06 57.4 123 30.1
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 2.3e-06 57.4 136 30.1
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.3e-06 57.4 213 27.7
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 2.3e-06 57.4 213 27.7
Medtr6g054960 Medicago truncatula HOM05D003520 ORTHO05D003332 2.3e-06 57.4 201 26.4
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 2.9e-06 57.0 127 33.1
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 2.9e-06 57.0 121 34.7
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 8.6e-06 55.5 131 29.0


User provided reference genes

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