Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 8.6e-304 1046.2 534 100.0
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.7e-235 819.3 506 81.6
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 8.8e-216 753.8 509 74.3
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 1.1e-213 746.9 511 75.9
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 4.5e-204 714.9 481 75.1
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 2.9e-198 695.7 429 81.8
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 4.9e-198 694.9 537 71.1
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 6.4e-198 694.5 538 71.6
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 5.4e-197 691.4 537 71.7
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 7.8e-196 687.6 538 71.4
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 1.3e-195 686.8 538 71.0
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 6.6e-195 684.5 537 71.5
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 2.0e-183 646.4 506 66.8
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 4.4e-175 618.6 537 66.1
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 5.1e-171 605.1 544 64.5
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 2.0e-167 593.2 544 64.2
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 1.2e-164 583.9 541 62.8
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 6.2e-161 571.6 532 61.5
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 7.9e-156 554.7 512 56.6
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 2.9e-118 429.9 382 63.1
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 2.6e-82 310.5 489 40.3
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 4.9e-81 306.2 496 40.3
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 6.4e-81 305.8 481 43.7
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 9.2e-80 302.0 502 39.0
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 2.0e-79 300.8 433 40.2
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 2.7e-79 300.4 517 38.9
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 6.0e-79 299.3 519 38.2
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 2.3e-78 297.4 497 41.2
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 6.6e-78 295.8 482 38.2
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 1.5e-77 294.7 375 44.8
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.6e-76 290.0 533 36.0
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 4.7e-76 289.7 524 37.2
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 8.0e-76 288.9 481 38.7
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.5e-74 284.6 542 35.6
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.5e-74 284.6 532 35.0
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 2.0e-74 284.3 476 37.8
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 7.5e-74 282.3 507 37.5
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 9.8e-74 282.0 496 37.3
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 1.7e-73 281.2 470 37.9
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 2.9e-73 280.4 494 37.7
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.9e-73 280.4 470 37.4
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 3.7e-73 280.0 495 36.2
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 3.7e-73 280.0 507 36.3
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 4.9e-73 279.6 492 36.8
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 4.9e-73 279.6 472 37.7
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 8.3e-73 278.9 511 36.2
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 2.4e-72 277.3 524 35.3
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 3.2e-72 276.9 483 36.2
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 7.0e-72 275.8 414 40.6
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 7.0e-72 275.8 418 41.4
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 1.2e-71 275.0 528 36.4
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 1.6e-71 274.6 514 37.0
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.7e-71 273.9 431 39.9
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 3.5e-71 273.5 529 34.6
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 3.5e-71 273.5 520 35.6
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 7.8e-71 272.3 506 35.8
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 1.7e-70 271.2 488 36.9
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.3e-70 270.8 411 39.9
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 3.0e-70 270.4 520 35.6
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 1.1e-69 268.5 496 37.3
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 1.5e-69 268.1 459 38.3
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.9e-69 267.7 437 38.7
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 4.3e-69 266.5 450 37.3
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 5.6e-69 266.2 534 35.2
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 7.3e-69 265.8 456 40.4
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 7.3e-69 265.8 424 38.9
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 9.5e-69 265.4 482 36.1
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 9.5e-69 265.4 424 39.4
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 2.8e-68 263.8 540 35.6
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 3.1e-67 260.4 495 37.0
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 4.0e-67 260.0 475 36.8
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 4.0e-67 260.0 484 34.7
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 8.9e-67 258.8 518 34.2
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 1.5e-66 258.1 435 37.0
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 3.4e-66 256.9 532 34.2
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 5.8e-66 256.1 437 38.7
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.8e-66 256.1 530 34.2
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 5.8e-66 256.1 423 39.5
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 7.5e-66 255.8 511 34.8
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 9.9e-66 255.4 358 41.1
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 1.3e-65 255.0 431 36.4
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.9e-65 253.8 404 39.4
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 3.7e-65 253.4 431 36.0
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 8.3e-65 252.3 429 36.6
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 1.4e-64 251.5 498 35.9
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 2.4e-64 250.8 429 36.8
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 2.4e-64 250.8 494 37.0
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.2e-64 250.4 535 34.2
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 5.4e-64 249.6 563 32.9
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 4.6e-63 246.5 412 38.1
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 7.8e-63 245.7 409 40.6
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 1.0e-62 245.4 469 37.1
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 3.9e-62 243.4 404 38.1
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 3.9e-62 243.4 531 33.0
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 2.5e-61 240.7 435 35.9
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 9.6e-61 238.8 530 33.6
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 1.6e-60 238.0 397 37.8
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 2.4e-59 234.2 472 36.4
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.1e-59 233.8 518 33.4
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 5.2e-59 233.0 492 34.6
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 1.3e-57 228.4 493 34.3
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.9e-57 227.3 499 33.3
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.1e-56 225.3 419 36.5
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 4.2e-56 223.4 445 35.7
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 2.7e-55 220.7 486 33.3
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 3.9e-54 216.9 461 33.2
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 3.9e-54 216.9 460 33.3
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 8.7e-54 215.7 480 32.7
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 1.1e-53 215.3 440 33.4
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.3e-52 211.8 473 31.7
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 3.6e-52 210.3 585 31.5
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 1.2e-50 205.3 355 36.9
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 4.2e-48 196.8 509 31.6
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 2.7e-47 194.1 267 45.7
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 6.0e-47 193.0 352 36.6
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 2.3e-46 191.0 308 38.6
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 2.3e-46 191.0 495 31.1
BcaC09g50676 Brassica carinata HOM05D004448 ORTHO05D015948 9.6e-45 185.7 498 31.1
BcaNung02444 Brassica carinata HOM05D004448 ORTHO05D015948 9.6e-45 185.7 503 32.8
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 8.1e-44 182.6 278 39.6
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 1.1e-43 182.2 399 33.3
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 3.1e-43 180.6 309 36.9
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 4.0e-43 180.3 398 32.2
A01p17460 Brassica napus HOM05D004448 ORTHO05D015948 9.0e-43 179.1 487 32.0
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 4.2e-40 170.2 289 39.4
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 2.1e-39 167.9 396 31.1
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.7e-39 167.5 318 35.8
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 3.3e-37 160.6 496 29.4
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 5.6e-37 159.8 132 62.9
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 1.1e-35 155.6 230 39.1
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.4e-35 155.2 220 42.3
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 9.0e-35 152.5 404 30.7
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.0e-33 149.1 304 35.2
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.3e-33 148.7 164 49.4
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.7e-33 148.3 321 34.9
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 3.8e-33 147.1 221 37.6
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 1.9e-32 144.8 289 34.9
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 1.0e-30 139.0 239 39.7
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 5.1e-30 136.7 339 33.6
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 4.3e-29 133.7 231 38.1
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 9.6e-29 132.5 204 38.7
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 8.2e-28 129.4 432 27.5
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.8e-26 123.2 241 35.3
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 7.6e-26 122.9 199 36.7
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.3e-25 122.1 485 25.4
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 3.8e-25 120.6 195 38.5
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 6.1e-23 113.2 366 30.3
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 1.5e-21 108.6 85 62.4
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 4.3e-21 107.1 199 32.7
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 1.6e-20 105.1 282 29.8
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 4.1e-19 100.5 219 31.1
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 4.1e-19 100.5 148 39.9
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 5.9e-18 96.7 120 43.3
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.2e-16 90.5 255 28.6
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.2e-16 90.5 255 28.6
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.0e-14 85.9 158 31.6
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.5e-13 81.3 204 30.4
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.4e-11 74.7 432 22.7
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 5.3e-11 73.6 96 42.7
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.6e-10 71.2 206 30.6
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 4.5e-10 70.5 140 32.1
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.5e-10 70.5 92 42.4
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 5.0e-09 67.0 72 48.6
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 1.2e-07 62.4 114 32.5
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 1.8e-06 58.5 57 47.4


User provided reference genes

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